Merge /home/gn2/gene

2 files changed, 117 insertions, 0 deletions

diff --git a/bin/genenetwork2 b/bin/genenetwork2
new file mode 100755
index 00000000..bbb2a19f
--- /dev/null
+++ b/bin/genenetwork2
@@ -0,0 +1,44 @@
+#! /bin/bash
+#
+# This will run the GN2 server (with default settings if none supplied).
+#
+# Environment settings can be used to preconfigure as well as a
+# settings.py file.
+
+# Absolute path to this script, e.g. /home/user/bin/foo.sh
+SCRIPT=$(readlink -f "$0")
+# Absolute path this script is in, thus /home/user/bin
+GN2_BASE_PATH=$(dirname $(dirname "$SCRIPT"))
+
+GN2_GUIX_PATH=$GN2_BASE_PATH/lib/python2.7/site-packages/genenetwork2-2.0-py2.7.egg
+if [ -d $GN2_GUIX_PATH ]; then
+  GN2_BASE_PATH=$GN2_GUIX_PATH
+fi
+echo $GN2_BASE_PATH
+
+# Handle settings parameter
+settings=$1
+if [ -z $settings ]; then settings=$GN2_BASE_PATH/etc/default_settings.py ; fi
+if [ ! -e $settings ]; then
+    echo "ERROR: can not locate settings file - pass it in the command line"
+    exit 1
+fi
+export WQFLASK_SETTINGS=$settings
+
+# We may change this one:
+export PYTHONPATH=$GN2_BASE_PATH/wqflask:$PYTHONPATH
+
+# TEMPDIR defaults to /tmp if nothing else
+if [ -z $TEMPDIR ]; then
+    TEMPDIR="/tmp"
+fi
+                         
+# Start the redis server
+echo -n "dir $TEMPDIR
+dbfilename gn2.rdb
+" | redis-server - &
+
+# Start the flask server running GN2
+cd $GN2_BASE_PATH/wqflask
+echo "Starting with $settings"
+/usr/bin/env python runserver.py
diff --git a/bin/test-website b/bin/test-website
new file mode 100755
index 00000000..aeab459b
--- /dev/null
+++ b/bin/test-website
@@ -0,0 +1,73 @@
+#!/usr/bin/env ruby
+
+
+USAGE = <<EOT
+This is Mechanical-Rob - an automated web server tester for 
+                         Genenetwork.org that uses the brilliant 
+                         mechanize gem.
+
+To use this software you need to install mechanize. Run it from
+the root of the genenetwork2 source tree as, for example,
+
+  ./bin/test-website http://localhost:5003/ (default)
+
+For more information see http://genenetwork.org/
+                        
+EOT
+$stderr.print USAGE
+
+require 'optparse'
+
+options = {}
+opts = OptionParser.new do |o|
+  o.banner = "Usage: #{File.basename($0)} [options] URL"
+  
+  o.on('-l','--link-checker', 'Check for dead links') do
+    options[:link_checker] = true
+  end
+  
+  o.on('-n','--navigation-test', 'Check for navigation test results') do
+    options[:navigation_test] = true
+  end
+
+  o.separator ""
+  o.on_tail('-h', '--help', 'display this help and exit') do
+    options[:show_help] = true
+  end
+end
+
+opts.parse!(ARGV)
+
+if options[:show_help]
+  print opts
+  exit 1
+end
+
+$host = 
+  if ARGV.size>0
+    ARGV.shift
+  else
+    "http://localhost:5003"
+  end
+
+$stderr.print "Testing <",$host,">\n"
+
+require 'mechanize'
+require 'minitest/spec'
+require 'minitest/autorun'
+
+# These are the actual testing modules
+
+libpath = File.dirname(File.dirname(__FILE__))
+$: << File.join(libpath,'test/lib')
+
+if options[:link_checker]
+  require 'link_checker'
+else
+  require 'main_web_functionality'
+end
+  
+if options[:navigation_test]
+  require 'NavigationTest'
+end
+