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| author | Muriithi Frederick Muriuki | 2018-01-19 10:36:19 +0300 |
|---|---|---|
| committer | Muriithi Frederick Muriuki | 2018-01-19 10:36:19 +0300 |
| commit | 63a5c8a42ad02e9126bb207465ff5eca98f6515d (patch) | |
| tree | 5e203e40c6edb5cf22213e79325f753aeeca780c /bin | |
| parent | 7004c0ee5e86bfb7ebe491356ca3210d2dc2b67b (diff) | |
| download | genenetwork2-63a5c8a42ad02e9126bb207465ff5eca98f6515d.tar.gz | |
Add elasticsearch module to the path
* Add some code to set up the path for the python-elasticsearch module.
Diffstat (limited to 'bin')
| -rwxr-xr-x | bin/genenetwork2 | 7 |
1 files changed, 6 insertions, 1 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2 index a7edb1c2..ccd9b1d9 100755 --- a/bin/genenetwork2 +++ b/bin/genenetwork2 @@ -61,6 +61,11 @@ export WQFLASK_OVERRIDES=$overrides # JSON echo WQFLASK_SETTINGS=$settings echo WQFLASK_OVERRIDES=$overrides +if [ -z $ELASTICSEARCH_PROFILE ]; then + echo -e "\033[1;33mWARNING: Elastic Search profile has not been set - use ELASTICSEARCH_PROFILE\033[0m"; +else + PYTHONPATH="$PYTHONPATH${PYTHONPATH:+:}$ELASTICSEARCH_PROFILE/lib/python2.7/site-packages" +fi if [ -z $GN2_PROFILE ] ; then echo "WARNING: GN2_PROFILE has not been set - you need the environment, so I hope you know what you are doing!" export GN2_PROFILE=$(dirname $(dirname $(which genenetwork2))) @@ -72,7 +77,7 @@ if [ -z $GN2_PROFILE ]; then read -p "PRESS [ENTER] TO CONTINUE..." else export PATH=$GN2_PROFILE/bin:$PATH - export PYTHONPATH=$GN2_PROFILE/lib/python2.7/site-packages + export PYTHONPATH="$GN2_PROFILE/lib/python2.7/site-packages${PYTHONPATH:+:}$PYTHONPATH" export R_LIBS_SITE=$GN2_PROFILE/site-library export GEM_PATH=$GN2_PROFILE/lib/ruby/gems/2.4.0 export JS_GUIX_PATH=$GN2_PROFILE/share/genenetwork2/javascript |