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author | Muriithi Frederick Muriuki | 2018-02-13 13:48:28 +0300 |
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committer | Muriithi Frederick Muriuki | 2018-02-13 18:28:26 +0300 |
commit | 1d45fac66b19340ed9378fcc08a928555ad95f74 (patch) | |
tree | a314ebf45b0eb0c964f440df0d83b1d8854a4828 | |
parent | 4fe60697964d81ce1425000e764fd0a27d73eb29 (diff) | |
download | genenetwork2-1d45fac66b19340ed9378fcc08a928555ad95f74.tar.gz |
Update module to make it more testable
* Update functions to make them more testable.
* Update code using updated functions.
-rw-r--r-- | wqflask/utility/elasticsearch_tools.py | 40 | ||||
-rw-r--r-- | wqflask/wqflask/user_manager.py | 61 |
2 files changed, 58 insertions, 43 deletions
diff --git a/wqflask/utility/elasticsearch_tools.py b/wqflask/utility/elasticsearch_tools.py index 4fc0035c..a964b025 100644 --- a/wqflask/utility/elasticsearch_tools.py +++ b/wqflask/utility/elasticsearch_tools.py @@ -1,23 +1,31 @@ -es = None -try: - from elasticsearch import Elasticsearch, TransportError - from utility.tools import ELASTICSEARCH_HOST, ELASTICSEARCH_PORT +from elasticsearch import Elasticsearch, TransportError +import logging - es = Elasticsearch([{ - "host": ELASTICSEARCH_HOST - , "port": ELASTICSEARCH_PORT - }]) if (ELASTICSEARCH_HOST and ELASTICSEARCH_PORT) else None - -except: +def get_elasticsearch_connection(): es = None + try: + from utility.tools import ELASTICSEARCH_HOST, ELASTICSEARCH_PORT + + es = Elasticsearch([{ + "host": ELASTICSEARCH_HOST + , "port": ELASTICSEARCH_PORT + }]) if (ELASTICSEARCH_HOST and ELASTICSEARCH_PORT) else None + + es_logger = logging.getLogger("elasticsearch") + es_logger.setLevel(logging.INFO) + es_logger.addHandler(logging.NullHandler()) + except: + es = None + + return es -def get_user_by_unique_column(column_name, column_value): - return get_item_by_unique_column(column_name, column_value, index="users", doc_type="local") +def get_user_by_unique_column(es, column_name, column_value, index="users", doc_type="local"): + return get_item_by_unique_column(es, column_name, column_value, index=index, doc_type=doc_type) -def save_user(user, user_id): - es_save_data("users", "local", user, user_id) +def save_user(es, user, user_id): + es_save_data(es, "users", "local", user, user_id) -def get_item_by_unique_column(column_name, column_value, index, doc_type): +def get_item_by_unique_column(es, column_name, column_value, index, doc_type): item_details = None try: response = es.search( @@ -32,7 +40,7 @@ def get_item_by_unique_column(column_name, column_value, index, doc_type): pass return item_details -def es_save_data(index, doc_type, data_item, data_id,): +def es_save_data(es, index, doc_type, data_item, data_id,): from time import sleep es.create(index, doc_type, body=data_item, id=data_id) sleep(1) # Delay 1 second to allow indexing diff --git a/wqflask/wqflask/user_manager.py b/wqflask/wqflask/user_manager.py index 630be9aa..6b667615 100644 --- a/wqflask/wqflask/user_manager.py +++ b/wqflask/wqflask/user_manager.py @@ -55,8 +55,9 @@ logger = getLogger(__name__) from base.data_set import create_datasets_list import requests -from utility.elasticsearch_tools import get_user_by_unique_column, save_user, es_save_data +from utility.elasticsearch_tools import * +es = get_elasticsearch_connection() THREE_DAYS = 60 * 60 * 24 * 3 #THREE_DAYS = 45 @@ -271,14 +272,18 @@ class RegisterUser(object): self.thank_you_mode = False self.errors = [] self.user = Bunch() + es = kw.get('es_connection', None) + + if not es: + self.errors.append("Missing connection object") self.user.email_address = kw.get('email_address', '').encode("utf-8").strip() if not (5 <= len(self.user.email_address) <= 50): self.errors.append('Email Address needs to be between 5 and 50 characters.') - - email_exists = get_user_by_unique_column("email_address", self.user.email_address) - if email_exists: - self.errors.append('User already exists with that email') + else: + email_exists = get_user_by_unique_column(es, "email_address", self.user.email_address) + if email_exists: + self.errors.append('User already exists with that email') self.user.full_name = kw.get('full_name', '').encode("utf-8").strip() if not (5 <= len(self.user.full_name) <= 50): @@ -305,7 +310,7 @@ class RegisterUser(object): self.user.confirmed = 1 self.user.registration_info = json.dumps(basic_info(), sort_keys=True) - save_user(self.user.__dict__, self.user.user_id) + save_user(es, self.user.__dict__, self.user.user_id) def set_password(password, user): pwfields = Bunch() @@ -381,7 +386,7 @@ class ForgotPasswordEmail(VerificationEmail): "email_address": toaddr, "timestamp": timestamp() } - es_save_data(self.key_prefix, "local", data, verification_code) + es_save_data(es, self.key_prefix, "local", data, verification_code) subject = self.subject body = render_template( @@ -431,7 +436,6 @@ def verify_email(): @app.route("/n/password_reset", methods=['GET']) def password_reset(): - from utility.elasticsearch_tools import get_item_by_unique_column logger.debug("in password_reset request.url is:", request.url) # We do this mainly just to assert that it's in proper form for displaying next page @@ -441,14 +445,16 @@ def password_reset(): hmac = request.args.get('hm') if verification_code: code_details = get_item_by_unique_column( - "verification_code", - verification_code, - ForgotPasswordEmail.key_prefix, - "local") + es + , "verification_code" + , verification_code + , ForgotPasswordEmail.key_prefix + , "local") if code_details: user_details = get_user_by_unique_column( - "email_address", - code_details["email_address"]) + es + , "email_address" + , code_details["email_address"]) if user_details: return render_template( "new_security/password_reset.html", user_encode=user_details["user_id"]) @@ -533,7 +539,7 @@ def github_oauth2(): result_dict = {arr[0]:arr[1] for arr in [tok.split("=") for tok in [token.encode("utf-8") for token in result.text.split("&")]]} github_user = get_github_user_details(result_dict["access_token"]) - user_details = get_user_by_unique_column("github_id", github_user["id"]) + user_details = get_user_by_unique_column(es, "github_id", github_user["id"]) if user_details == None: user_details = { "user_id": str(uuid.uuid4()) @@ -545,7 +551,7 @@ def github_oauth2(): , "active": 1 , "confirmed": 1 } - save_user(user_details, user_details["user_id"]) + save_user(es, user_details, user_details["user_id"]) url = "/n/login?type=github&uid="+user_details["user_id"] return redirect(url) @@ -566,7 +572,7 @@ def orcid_oauth2(): result = requests.post(ORCID_TOKEN_URL, data=data) result_dict = json.loads(result.text.encode("utf-8")) - user_details = get_user_by_unique_column("orcid", result_dict["orcid"]) + user_details = get_user_by_unique_column(es, "orcid", result_dict["orcid"]) if user_details == None: user_details = { "user_id": str(uuid4()) @@ -580,7 +586,7 @@ def orcid_oauth2(): , "active": 1 , "confirmed": 1 } - save_user(user_details, user_details["user_id"]) + save_user(es, user_details, user_details["user_id"]) url = "/n/login?type=orcid&uid="+user_details["user_id"] else: flash("There was an error getting code from ORCID") @@ -599,7 +605,7 @@ class LoginUser(object): def oauth2_login(self, login_type, user_id): """Login via an OAuth2 provider""" - user_details = get_user_by_unique_column("user_id", user_id) + user_details = get_user_by_unique_column(es, "user_id", user_id) if user_details: user = model.User() user.id = user_details["user_id"] @@ -616,7 +622,6 @@ class LoginUser(object): logger.debug("in login params are:", params) if not params: from utility.tools import GITHUB_AUTH_URL, ORCID_AUTH_URL - from utility.elasticsearch_tools import es external_login = None if GITHUB_AUTH_URL or ORCID_AUTH_URL: external_login={ @@ -628,8 +633,9 @@ class LoginUser(object): , external_login=external_login , es_server=es.ping()) else: - user_details = get_user_by_unique_column("email_address", params["email_address"]) + user_details = get_user_by_unique_column(es, "email_address", params["email_address"]) user = None + valid = None if user_details: user = model.User(); for key in user_details: @@ -672,7 +678,7 @@ class LoginUser(object): else: if user: self.unsuccessful_login(user) - flash("Invalid email-address or password. Please try again.", "alert-error") + flash("Invalid email-address or password. Please try again.", "alert-danger") response = make_response(redirect(url_for('login'))) return response @@ -739,7 +745,7 @@ def forgot_password(): def forgot_password_submit(): params = request.form email_address = params['email_address'] - user_details = get_user_by_unique_column("email_address", email_address) + user_details = get_user_by_unique_column(es, "email_address", email_address) if user_details: ForgotPasswordEmail(user_details["email_address"]) # try: @@ -815,16 +821,17 @@ def register(): params = request.form if request.form else request.args + params = params.to_dict(flat=True) + params["es_connection"] = es if params: logger.debug("Attempting to register the user...") result = RegisterUser(params) errors = result.errors - if result.thank_you_mode: - assert not errors, "Errors while in thank you mode? That seems wrong..." - return render_template("new_security/registered.html", - subject=VerificationEmail.subject) + if len(errors) == 0: + flash("Registration successful. You may login with your new account", "alert-info") + return redirect(url_for("login")) return render_template("new_security/register_user.html", values=params, errors=errors) |