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| author | zsloan | 2017-06-14 18:40:35 +0000 |
|---|---|---|
| committer | zsloan | 2017-06-14 18:40:35 +0000 |
| commit | ee6e8504e0c6e24d75f9ea939b1e48762dcfc977 (patch) | |
| tree | 19680d0eb564875ae41bf518e9e41092371a072e | |
| parent | ecd573cc7e150805383d9cdbd41f1b136c9afc0e (diff) | |
| download | genenetwork2-ee6e8504e0c6e24d75f9ea939b1e48762dcfc977.tar.gz | |
Added descriptions for GEMMA and PLINK as well as a warning about the issue with GEMMA where you can't run it simultaneously on two traits from the same group
| -rw-r--r-- | wqflask/wqflask/templates/show_trait_mapping_tools.html | 12 |
1 files changed, 12 insertions, 0 deletions
diff --git a/wqflask/wqflask/templates/show_trait_mapping_tools.html b/wqflask/wqflask/templates/show_trait_mapping_tools.html index d8a18f38..bded60d2 100644 --- a/wqflask/wqflask/templates/show_trait_mapping_tools.html +++ b/wqflask/wqflask/templates/show_trait_mapping_tools.html @@ -341,6 +341,7 @@ </div> </div> <div class="col-xs-6"> + {% if dataset.group.mapping_id == "1" %} <dl> <dt>Interval Mapping</dt> <dd>Interval mapping is a process in which the statistical significance of a hypothetical QTL is evaluated at regular points across a chromosome, even in the absence of explicit genotype data at those points.</dd> @@ -349,6 +350,17 @@ <dt>R/qtl</dt> <dd>R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTL) in experimental crosses.</dd> </dl> + {% else %} + <dl> + <dt>GEMMA</dt> + <dd> + GEMMA is software implementing the Genome-wide Efficient Mixed Model Association algorithm for a standard linear mixed model for genome-wide association studies (GWAS).<br> + <font style="color: red;">Note: There currently exists an issue where GEMMA can't be run on traits from the same group simultaneously. If you recieve an error, please wait a few minutes and try again.</font> + </dd> + <dt>PLINK</dt> + <dd>PLINK is a free, open-source whole genome association analysis toolset.</dd> + </dl> + {% endif %} </div> <div id="mapping_result_holder_wrapper" style="display:none;"> <div id="mapping_result_holder"></div> |