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| author | zsloan | 2019-07-18 17:58:33 -0500 |
|---|---|---|
| committer | zsloan | 2019-07-18 17:58:33 -0500 |
| commit | 4ef78a90b4b232300a7806afdc5503fcf6fc7c4b (patch) | |
| tree | 99c9bab4be841fd2386f1c5515abef9d3804216d | |
| parent | 6dab4e5935b87ad818129e3b4bfab4cfa465addf (diff) | |
| download | genenetwork2-4ef78a90b4b232300a7806afdc5503fcf6fc7c4b.tar.gz | |
Made change that should fix encoding issue, fingers crossed
| -rw-r--r-- | wqflask/base/trait.py | 6 | ||||
| -rw-r--r-- | wqflask/wqflask/database.py | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/search_results.py | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/views.py | 2 |
4 files changed, 7 insertions, 5 deletions
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py index 6fecf725..0527449b 100644 --- a/wqflask/base/trait.py +++ b/wqflask/base/trait.py @@ -396,8 +396,10 @@ def retrieve_trait_info(trait, dataset, get_qtl_info=False): #XZ: assign SQL query result to trait attributes. for i, field in enumerate(dataset.display_fields): holder = trait_info[i] - if isinstance(trait_info[i], basestring): - holder = unicode(trait_info[i], "utf-8", "ignore") + # if isinstance(trait_info[i], basestring): + # logger.debug("HOLDER:", holder) + # logger.debug("HOLDER2:", holder.decode(encoding='latin1')) + # holder = unicode(trait_info[i], "utf-8", "ignore") setattr(trait, field, holder) if dataset.type == 'Publish': diff --git a/wqflask/wqflask/database.py b/wqflask/wqflask/database.py index 96c2c301..adeed6ad 100644 --- a/wqflask/wqflask/database.py +++ b/wqflask/wqflask/database.py @@ -9,7 +9,7 @@ import utility.logger logger = utility.logger.getLogger(__name__ ) -engine = create_engine(SQL_URI, convert_unicode=True) +engine = create_engine(SQL_URI, encoding="latin1") db_session = scoped_session(sessionmaker(autocommit=False, autoflush=False, diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py index 2ce76c37..444e1f40 100644 --- a/wqflask/wqflask/search_results.py +++ b/wqflask/wqflask/search_results.py @@ -125,7 +125,7 @@ views.py). elif this_trait.dataset.type == "Geno": trait_dict['location'] = this_trait.location_repr elif this_trait.dataset.type == "Publish": - trait_dict['description'] = this_trait.description_display.decode('utf-8', 'replace') + trait_dict['description'] = this_trait.description_display trait_dict['authors'] = this_trait.authors trait_dict['pubmed_id'] = "N/A" if this_trait.pubmed_id: diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index 109e30cc..2ff6d4d7 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -80,7 +80,7 @@ def connect_db(): db = getattr(g, '_database', None) if db is None: logger.debug("Get new database connector") - g.db = g._database = sqlalchemy.create_engine(SQL_URI) + g.db = g._database = sqlalchemy.create_engine(SQL_URI, encoding="latin1") logger.debug(g.db) @app.teardown_appcontext |