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| author | zsloan | 2019-07-17 10:53:50 -0500 |
|---|---|---|
| committer | zsloan | 2019-07-17 10:53:50 -0500 |
| commit | 375c87faac2e1eeee064263aafb1e20480643eb7 (patch) | |
| tree | a4da96e84c8d8b1773cd4ff957429abf96446913 | |
| parent | 477a259b752537b615e286e4cae48234b9cd782b (diff) | |
| download | genenetwork2-375c87faac2e1eeee064263aafb1e20480643eb7.tar.gz | |
Error page should now correctly appear when doing LOCO mapping with GEMMA (if there's no appropriate genotype file)
| -rw-r--r-- | wqflask/wqflask/marker_regression/gemma_mapping.py | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/wqflask/wqflask/marker_regression/gemma_mapping.py b/wqflask/wqflask/marker_regression/gemma_mapping.py index 4e3c203d..895d4ac6 100644 --- a/wqflask/wqflask/marker_regression/gemma_mapping.py +++ b/wqflask/wqflask/marker_regression/gemma_mapping.py @@ -221,7 +221,11 @@ def parse_loco_output(this_dataset, gwa_output_filename): marker_obs = [] previous_chr = 0 + no_results = False for this_file in output_filelist: + if not os.path.isfile(this_file): + no_results = True + break with open(this_file) as output_file: for line in output_file: if line.startswith("chr\t"): |