diff options
| author | Pjotr Prins | 2016-09-13 09:09:21 +0200 |
|---|---|---|
| committer | Pjotr Prins | 2016-09-13 09:09:21 +0200 |
| commit | f399b3bf514b396de67644d4b1e2018886cecac2 (patch) | |
| tree | ac7bae3642875a730c4cee662cd94ebaaebf3e7c | |
| parent | d3ee8ad4b193cdcb9762a267955a2778ea75dc5a (diff) | |
| download | genenetwork2-f399b3bf514b396de67644d4b1e2018886cecac2.tar.gz | |
Run scripts from ./wqflask - just like the webserver
| -rwxr-xr-x | bin/genenetwork2 | 9 | ||||
| -rw-r--r-- | wqflask/base/data_set.py | 2 | ||||
| -rw-r--r-- | wqflask/maintenance/gen_select_dataset.py | 4 |
3 files changed, 8 insertions, 7 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2 index 3a8c3ff4..d926d6a1 100755 --- a/bin/genenetwork2 +++ b/bin/genenetwork2 @@ -13,13 +13,12 @@ # Environment settings can be used to preconfigure as well as a # settings.py file. -# Absolute path to this script, e.g. /home/user/bin/foo.sh SCRIPT=$(readlink -f "$0") -# Absolute path this script is in, thus /home/user/bin GN2_BASE_PATH=$(dirname $(dirname "$SCRIPT")) GN2_GUIX_PATH=$GN2_BASE_PATH/lib/python2.7/site-packages/genenetwork2-2.0-py2.7.egg if [ -d $GN2_GUIX_PATH ]; then + echo GN2 is running from GUIX GN2_BASE_PATH=$GN2_GUIX_PATH fi echo $GN2_BASE_PATH @@ -48,9 +47,11 @@ fi # Now handle command parameter -c if [ $1 = '-c' ] ; then + cd $GN2_BASE_PATH/wqflask + cmd=${2#wqflask/} echo PYTHONPATH=$PYTHONPATH - echo RUNNING COMMAND $2 - /usr/bin/env python $2 + echo RUNNING COMMAND $cmd + /usr/bin/env python $cmd exit 0 fi diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 6cd3c8e6..1b4e1195 100644 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -91,7 +91,7 @@ Publish or ProbeSet. E.g. if USE_GN_SERVER: data = menu_main() else: - file_name = "wqflask/wqflask/static/new/javascript/dataset_menu_structure.json" + file_name = "wqflask/static/new/javascript/dataset_menu_structure.json" with open(file_name, 'r') as fh: data = json.load(fh) diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py index f2f0830f..23adc4f9 100644 --- a/wqflask/maintenance/gen_select_dataset.py +++ b/wqflask/maintenance/gen_select_dataset.py @@ -40,8 +40,8 @@ from __future__ import print_function, division import sys -# NEW: Note we prepend the current path - otherwise a guix instance of GN2 is used instead -sys.path.insert(0,'./wqflask') +# NEW: Note we prepend the current path - otherwise a guix instance of GN2 may be used instead +sys.path.insert(0,'./') # NEW: import app to avoid a circular dependency on utility.tools from wqflask import app |