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| author | zsloan | 2021-07-26 20:50:31 +0000 |
|---|---|---|
| committer | zsloan | 2021-08-26 19:03:36 +0000 |
| commit | cfa526cf5cbec3a9c9282955c762c0a60afc03b4 (patch) | |
| tree | a875953ef3bbcb9d928c7ff90c51581e86aa4a93 | |
| parent | cc7c392198f73ac8e8419be1367ce566d85a873c (diff) | |
| download | genenetwork2-cfa526cf5cbec3a9c9282955c762c0a60afc03b4.tar.gz | |
Added check for pair_scan in start_vars
| -rw-r--r-- | wqflask/wqflask/marker_regression/run_mapping.py | 7 |
1 files changed, 3 insertions, 4 deletions
diff --git a/wqflask/wqflask/marker_regression/run_mapping.py b/wqflask/wqflask/marker_regression/run_mapping.py index ebad7d36..8b9f89d2 100644 --- a/wqflask/wqflask/marker_regression/run_mapping.py +++ b/wqflask/wqflask/marker_regression/run_mapping.py @@ -126,8 +126,6 @@ class RunMapping: self.use_loco = None self.suggestive = "" self.significant = "" - # Initializing this since it is checked in views to determine which template to use - self.pair_scan = False if 'transform' in start_vars: self.transform = start_vars['transform'] else: @@ -239,8 +237,9 @@ class RunMapping: else: self.method = "em" self.model = start_vars['mapmodel_rqtl_geno'] - # if start_vars['pair_scan'] == "true": - # self.pair_scan = True + self.pair_scan = False + if 'pair_scan' in start_vars: + self.pair_scan = True if self.permCheck and self.num_perm > 0: self.perm_output, self.suggestive, self.significant, results = rqtl_mapping.run_rqtl( self.this_trait.name, self.vals, self.samples, self.dataset, self.mapping_scale, self.model, self.method, self.num_perm, self.perm_strata, self.do_control, self.control_marker, self.manhattan_plot, self.covariates) |