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| author | zsloan | 2020-12-09 15:16:56 -0600 |
|---|---|---|
| committer | zsloan | 2020-12-09 15:16:56 -0600 |
| commit | cdba483dfae360b99a77551b82d27f2d5b6c7b08 (patch) | |
| tree | e75245abe02485a7c471741854e196e0342d2e40 | |
| parent | 0edd6f931c0204f9cc2a0e64cc5fd7a983e6767d (diff) | |
| download | genenetwork2-cdba483dfae360b99a77551b82d27f2d5b6c7b08.tar.gz | |
Fixed mistake in string formatting the bootstrap option for qtlreaper mapping
| -rw-r--r-- | wqflask/wqflask/marker_regression/qtlreaper_mapping.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/qtlreaper_mapping.py b/wqflask/wqflask/marker_regression/qtlreaper_mapping.py index 505ae295..b2eb58ae 100644 --- a/wqflask/wqflask/marker_regression/qtlreaper_mapping.py +++ b/wqflask/wqflask/marker_regression/qtlreaper_mapping.py @@ -33,7 +33,7 @@ def run_reaper(this_trait, this_dataset, samples, vals, json_data, num_perm, boo ) opt_list.append("-b") - opt_list.append(f"--n_bootstrap{str(num_bootstrap)}") + opt_list.append(f"--n_bootstrap {str(num_bootstrap)}") opt_list.append(f"--bootstrap_output{webqtlConfig.GENERATED_IMAGE_DIR}{bootstrap_filename}.txt") if num_perm > 0: permu_filename =("{this_dataset.group.name}_PERM_" + |