diff options
author | Zachary Sloan | 2013-01-25 23:58:58 +0000 |
---|---|---|
committer | Zachary Sloan | 2013-01-25 23:58:58 +0000 |
commit | 8e6fd914688625b686e8bd7da1704e96d83265f1 (patch) | |
tree | dec4b1cfb139e83a71adbcb4e982d7e231b50a8d | |
parent | b2c9e0a7dce0dc474704bf53ed70f9d92694d289 (diff) | |
download | genenetwork2-8e6fd914688625b686e8bd7da1704e96d83265f1.tar.gz |
Added a bunch of things to notes
-rw-r--r-- | misc/gn_installation_notes.txt | 27 | ||||
-rw-r--r-- | misc/notes.txt | 20 |
2 files changed, 47 insertions, 0 deletions
diff --git a/misc/gn_installation_notes.txt b/misc/gn_installation_notes.txt index 173f2819..bad21226 100644 --- a/misc/gn_installation_notes.txt +++ b/misc/gn_installation_notes.txt @@ -19,6 +19,27 @@ apt-file search _______ Install from requirements.txt: pip install -r gene/wqflask/requirements.txt -t ve27 + +============================================ + +Using dpkg + +Check which system packages are already installed: +dpkg -l | less + +=========================================== + +Using Yolk + +Install Yolk: +pip install yolk + +Check packages installed in this virtual environment: +yolk -l + +Checks packages that have updates available: +yolk -U + =========================================== Installing virtualenv: @@ -97,6 +118,12 @@ pip install logging_tree ========================================== +Install colordiff (just to make it easier to view differences in files, not necessary for GN) + +sudo apt-get install colordiff + +========================================== + To get server running: !If having seemingly inexplicable problems with imports, make sure I've started the environment! diff --git a/misc/notes.txt b/misc/notes.txt index e60102fc..3d4209c9 100644 --- a/misc/notes.txt +++ b/misc/notes.txt @@ -20,6 +20,14 @@ apt-cache show _______ Search for package with a specified file that can be installed with apt-get apt-file search _______ +============================================ + +Check which system packages are installed: +dpkg -l | less + +============================================ + + To fix error "mysql_config not found": sudo apt-get install libmysqlclient-dev @@ -130,6 +138,9 @@ python setup.py install Using Yolk +Install Yolk: +pip install yolk + Check packages installed in this virtual environment: yolk -l @@ -147,3 +158,12 @@ To iterate through dictionary items: for X, Y in MyDictionary.items(): Create symbolic link: ln -s dir_to_link_to linking_dir + +=========================================== + +Using grep: + +grep -ir (search string) (directory) + +-i ignores case +-r searches recursively through subdirectories of directory you specify |