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authorzsloan2023-05-04 18:20:44 +0000
committerzsloan2023-05-04 18:20:44 +0000
commit5a8432adb56f9fddbc9e42a9eb8de5e4a0879ee6 (patch)
treee6f1dcb12e7ea1147d456ce7a6f53dd26939c440
parent3a5131b57ec93c5cc955a3f5ec0511caadfb4db0 (diff)
downloadgenenetwork2-5a8432adb56f9fddbc9e42a9eb8de5e4a0879ee6.tar.gz
Fix bug where global search had wrong checkbox values
-rw-r--r--wqflask/wqflask/gsearch.py8
1 files changed, 5 insertions, 3 deletions
diff --git a/wqflask/wqflask/gsearch.py b/wqflask/wqflask/gsearch.py
index 9e3d8133..72c55153 100644
--- a/wqflask/wqflask/gsearch.py
+++ b/wqflask/wqflask/gsearch.py
@@ -5,6 +5,7 @@ from pymonad.tools import curry
import requests
from gn3.monads import MonadicDict
+from utility.hmac import hmac_creation
from utility.tools import GN3_LOCAL_URL
from base import webqtlConfig
@@ -24,7 +25,7 @@ class GSearch:
# search results.
chr_mb = curry(2, lambda chr, mb: f"Chr{chr}: {mb:.6f}")
format3f = lambda x: f"{x:.3f}"
- hmac = curry(2, lambda dataset, dataset_fullname: f"{dataset_fullname}:{dataset}")
+ hmac = curry(3, lambda trait_name, dataset, data_hmac: f"{trait_name}:{dataset}:{data_hmac}")
convert_lod = lambda x: x / 4.61
self.trait_list = []
for i, trait in enumerate(requests.get(
@@ -42,7 +43,7 @@ class GSearch:
.to_arguments(trait.pop("geno_chr"), trait.pop("geno_mb")))
if self.type == "gene":
trait["hmac"] = (Maybe.apply(hmac)
- .to_arguments(trait["dataset"], trait["dataset_fullname"]))
+ .to_arguments(trait['name'], trait['dataset'], Just(hmac_creation(f"{trait['name']}:{trait['dataset']}"))))
elif self.type == "phenotype":
trait["display_name"] = trait["name"]
inbredsetcode = trait.pop("inbredsetcode")
@@ -50,8 +51,9 @@ class GSearch:
trait["display_name"] = (Maybe.apply(
curry(2, lambda inbredsetcode, name: f"{inbredsetcode}_{name}"))
.to_arguments(inbredsetcode, trait["name"]))
+
trait["hmac"] = (Maybe.apply(hmac)
- .to_arguments(trait.pop("dataset_fullname"), trait["name"]))
+ .to_arguments(trait['name'], trait['dataset'], Just(hmac_creation(f"{trait['name']}:{trait['dataset']}"))))
trait["authors_display"] = (trait.pop("authors").map(
lambda authors:
", ".join(authors[:2] + ["et al."] if len(authors) >=2 else authors)))