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author | Pjotr Prins | 2016-06-21 09:10:40 +0000 |
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committer | Pjotr Prins | 2016-06-21 09:10:40 +0000 |
commit | 74ab1eff68fdad4183ce2a7490cfbc9ac1f4513f (patch) | |
tree | fc8733378c82d0b55fde284b39d4072692499bf2 | |
parent | aa638a88e843657bb80f1db1e726b6135cefd11f (diff) | |
download | genenetwork2-74ab1eff68fdad4183ce2a7490cfbc9ac1f4513f.tar.gz |
Benchmarking: allow output select with LOG_BENCH
-rw-r--r-- | etc/default_settings.py | 1 | ||||
-rw-r--r-- | wqflask/dbFunction/webqtlDatabaseFunction.py | 6 | ||||
-rw-r--r-- | wqflask/utility/benchmark.py | 29 | ||||
-rw-r--r-- | wqflask/utility/logger.py | 2 | ||||
-rw-r--r-- | wqflask/utility/tools.py | 1 |
5 files changed, 22 insertions, 17 deletions
diff --git a/etc/default_settings.py b/etc/default_settings.py index 296ffcb0..4bb1b80c 100644 --- a/etc/default_settings.py +++ b/etc/default_settings.py @@ -39,6 +39,7 @@ WEBSERVER_DEPLOY = None # Deployment specifics (nyi) LOG_LEVEL = 'WARNING' # Logger mode (DEBUG|INFO|WARNING|ERROR|CRITICAL) LOG_LEVEL_DEBUG = 1 # Debug log level (0-5) (nyi) LOG_SQL = 'False' # Log SQL/backend calls +LOG_BENCH = True # Log bench marks USE_REDIS = True # REDIS caching (note that redis will be phased out) USE_GN_SERVER = True # Use GN_SERVER SQL calls diff --git a/wqflask/dbFunction/webqtlDatabaseFunction.py b/wqflask/dbFunction/webqtlDatabaseFunction.py index 4a0fb40f..b14c9312 100644 --- a/wqflask/dbFunction/webqtlDatabaseFunction.py +++ b/wqflask/dbFunction/webqtlDatabaseFunction.py @@ -28,7 +28,7 @@ import string import urllib2 import json from base import webqtlConfig -from utility.tools import USE_GN_SERVER +from utility.tools import USE_GN_SERVER, LOG_SQL from utility.benchmark import Bench from utility.logger import getLogger @@ -51,7 +51,7 @@ def fetchone(query): """Return tuple containing one row by calling SQL directly """ - with Bench("SQL took"): + with Bench("SQL took",LOG_SQL): def helper(query): res = g.db.execute(query) return res.fetchone() @@ -62,7 +62,7 @@ def gn_server(path): """Return JSON record by calling GN_SERVER """ - with Bench("GN_SERVER took"): + with Bench("GN_SERVER took",LOG_SQL): res = urllib2.urlopen("http://localhost:8880/"+path) rest = res.read() res2 = json.loads(rest) diff --git a/wqflask/utility/benchmark.py b/wqflask/utility/benchmark.py index d5b32703..887b3d88 100644 --- a/wqflask/utility/benchmark.py +++ b/wqflask/utility/benchmark.py @@ -3,34 +3,37 @@ from __future__ import print_function, division, absolute_import import collections import inspect import time +from utility.tools import LOG_BENCH class Bench(object): entries = collections.OrderedDict() - def __init__(self, name=None): + def __init__(self, name=None, write_output=True): self.name = name + self.write_output = write_output def __enter__(self): - if self.name: - print("Starting benchmark: %s" % (self.name)) - else: - print("Starting benchmark at: %s [%i]" % (inspect.stack()[1][3], inspect.stack()[1][2])) + if self.write_output: + if self.name: + print("Starting benchmark: %s" % (self.name)) + else: + print("Starting benchmark at: %s [%i]" % (inspect.stack()[1][3], inspect.stack()[1][2])) self.start_time = time.time() def __exit__(self, type, value, traceback): - if self.name: - name = self.name - else: - name = "That" - time_taken = time.time() - self.start_time - print(" %s took: %f seconds" % (name, (time_taken))) + if self.write_output: + if self.name: + name = self.name + else: + name = "That" + + print(" %s took: %f seconds" % (name, (time_taken))) if self.name: Bench.entries[self.name] = Bench.entries.get(self.name, 0) + time_taken - @classmethod def report(cls): total_time = sum((time_taken for time_taken in cls.entries.itervalues())) @@ -42,4 +45,4 @@ class Bench(object): def reset(cls): """Reset the entries""" - cls.entries = collections.OrderedDict()
\ No newline at end of file + cls.entries = collections.OrderedDict() diff --git a/wqflask/utility/logger.py b/wqflask/utility/logger.py index d56b134c..d1324dd5 100644 --- a/wqflask/utility/logger.py +++ b/wqflask/utility/logger.py @@ -81,7 +81,7 @@ class GNLogger: if fun: result = fun(sqlcommand) if LOG_SQL: - self.debug(result) + self.info(result) return result def collect(self,fun,*args): diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py index fca5917e..c1b635e0 100644 --- a/wqflask/utility/tools.py +++ b/wqflask/utility/tools.py @@ -171,6 +171,7 @@ WEBSERVER_MODE = get_setting('WEBSERVER_MODE') LOG_LEVEL = get_setting('LOG_LEVEL') LOG_LEVEL_DEBUG = get_setting_int('LOG_LEVEL_DEBUG') LOG_SQL = get_setting_bool('LOG_SQL') +LOG_BENCH = get_setting_bool('LOG_BENCH') USE_REDIS = get_setting_bool('USE_REDIS') USE_GN_SERVER = get_setting_bool('USE_GN_SERVER') |