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authorzsloan2020-04-28 11:51:00 -0500
committerzsloan2020-04-28 11:51:00 -0500
commitd4061f13f30c6fbb48180dcd6d65fda200731d81 (patch)
treee75bd1de707a99683bd53585c4d01b6c3dfd979d
parentd2c7f76294cd7a1158402cdc67e0382bead17619 (diff)
parent86d885f5f2e1069a5b1606296a71992805486aec (diff)
downloadgenenetwork2-d4061f13f30c6fbb48180dcd6d65fda200731d81.tar.gz
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing
Diffstat
-rw-r--r--doc/README.org6
-rw-r--r--etc/default_settings.py10
-rwxr-xr-xscripts/run_debug.sh20
-rw-r--r--wqflask/wqflask/static/new/javascript/dataset_menu_structure.json7584
-rw-r--r--wqflask/wqflask/templates/base.html2
-rw-r--r--wqflask/wqflask/user_manager.py5
-rw-r--r--wqflask/wqflask/user_session.py21
-rw-r--r--wqflask/wqflask/views.py1
8 files changed, 53 insertions, 7596 deletions
diff --git a/doc/README.org b/doc/README.org
index 828ed2cd..c2ef2d57 100644
--- a/doc/README.org
+++ b/doc/README.org
@@ -57,6 +57,12 @@ or you can set environment variables to override individual parameters, e.g.
the debug and logging switches can be particularly useful when
developing GN2.
+* Running Redis
+
+Install redis. Make sure you add the setting:
+
+: appendonly yes
+
* Run MariaDB server
** Install MariaDB with GNU GUIx
diff --git a/etc/default_settings.py b/etc/default_settings.py
index 64a78686..f368237b 100644
--- a/etc/default_settings.py
+++ b/etc/default_settings.py
@@ -32,7 +32,7 @@ GN_SERVER_URL = "http://localhost:8880/" # REST API server
SQL_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s"
SQL_ALCHEMY_POOL_RECYCLE = 3600
GN_SERVER_URL = "http://localhost:8880/" # REST API server
-GN2_BASE_URL = "http://genenetwork.org/"
+GN2_BASE_URL = "http://genenetwork.org/" # to pick up REST API
GN2_BRANCH_URL = GN2_BASE_URL
# ---- Flask configuration (see website)
@@ -44,7 +44,13 @@ SECURITY_RECOVERABLE = True
SECURITY_EMAIL_SENDER = "no-reply@genenetwork.org"
SECURITY_POST_LOGIN_VIEW = "/thank_you"
-SERVER_PORT = 5003 # running on localhost
+# ---- SERVER_PORT needs an override before firing up the server
+SERVER_PORT = os.environ['SERVER_PORT']
+if isinstance(SERVER_PORT, str):
+ SERVER_PORT = int(SERVER_PORT) # don't do this for other settings!
+else:
+ SERVER_PORT = 5003
+
SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a\xbc\xfc\x80:*\xebc'
GITHUB_CLIENT_ID = "UNKNOWN"
diff --git a/scripts/run_debug.sh b/scripts/run_debug.sh
new file mode 100755
index 00000000..be7ecdb8
--- /dev/null
+++ b/scripts/run_debug.sh
@@ -0,0 +1,20 @@
+#! /bin/bash
+#
+# PLEASE DO NOT CHANGE THIS FILE - copy it elsewhere to run
+#
+# Run with GN2_PROFILE and SERVER_PORT overrides, e.g.
+#
+# env GN2_PROFILE=/usr/local/guix-profiles/gn-latest SERVER_PORT=5010 scripts/run_debug.sh
+
+[ -z $GN2_PROFILE ] && export GN2_PROFILE=/usr/local/guix-profiles/gn-latest
+[ -z $SERVER_PORT ] && export SERVER_PORT=5010
+
+echo Running on port $SERVER_PORT from $GN2_PROFILE
+
+cwd=`pwd`
+echo Running source from $cwd
+
+mkdir -p ~/tmp
+
+env TMPDIR=~/tmp WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG GENENETWORK_FILES=/export/data/genenetwork/genotype_files/ SQL_URI=mysql://webqtlout:webqtlout@localhost/db_webqtl ./bin/genenetwork2 etc/default_settings.py -gunicorn-dev
+
diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
deleted file mode 100644
index 679e38b0..00000000
--- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
+++ /dev/null
@@ -1,7584 +0,0 @@
-{
- "datasets": {
- "arabidopsis": {
- "BayXSha": {
- "Genotypes": [
- [
- "None",
- "BayXShaGeno",
- "BayXSha Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "642",
- "BayXShaPublish",
- "BayXSha Published Phenotypes"
- ]
- ]
- },
- "ColXBur": {
- "Genotypes": [
- [
- "None",
- "ColXBurGeno",
- "ColXBur Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "623",
- "ColXBurPublish",
- "ColXBur Published Phenotypes"
- ]
- ]
- },
- "ColXCvi": {
- "Genotypes": [
- [
- "None",
- "ColXCviGeno",
- "ColXCvi Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "640",
- "ColXCviPublish",
- "ColXCvi Published Phenotypes"
- ]
- ]
- }
- },
- "barley": {
- "QSM": {
- "Leaf mRNA": [
- [
- "236",
- "B1LI0809R",
- "Barley1 Leaf INOC TTKS (Aug09) RMA"
- ],
- [
- "235",
- "B1LI0809M5",
- "Barley1 Leaf INOC TTKS (Aug09) MAS5"
- ],
- [
- "237",
- "B1MI0809M5",
- "Barley1 Leaf MOCK TTKS (Aug09) MAS5"
- ],
- [
- "238",
- "B1MI0809R",
- "Barley1 Leaf MOCK TTKS (Aug09) RMA"
- ]
- ]
- },
- "SXM": {
- "Embryo mRNA": [
- [
- "128",
- "B139_K_1206_R",
- "Barley1 Embryo gcRMA SCRI (Dec06)"
- ],
- [
- "124",
- "B139_K_1206_M",
- "Barley1 Embryo MAS 5.0 SCRI (Dec06)"
- ],
- [
- "114",
- "B150_K_0406_R",
- "Barley1 Embryo0 gcRMA SCRI (Apr06)"
- ]
- ],
- "Genotypes": [
- [
- "615",
- "SXMGeno",
- "SXM Genotypes"
- ]
- ],
- "Leaf mRNA": [
- [
- "127",
- "B30_K_1206_M",
- "Barley1 Leaf MAS 5.0 SCRI (Dec06)"
- ],
- [
- "125",
- "B30_K_1206_R",
- "Barley1 Leaf gcRMA SCRI (Dec06)"
- ],
- [
- "126",
- "B30_K_1206_Rn",
- "Barley1 Leaf gcRMAn SCRI (Dec06)"
- ]
- ],
- "Phenotypes": [
- [
- "608",
- "SXMPublish",
- "Barley SMP Published Phenotypes"
- ]
- ]
- }
- },
- "drosophila": {
- "DGRP": {
- "Whole Body mRNA": [
- [
- "297",
- "NCSU_DrosWB_LC_RMA_0111",
- "NCSU Drosophila Whole Body (Jan11) RMA"
- ]
- ]
- },
- "Oregon-R_x_2b3": {
- "Whole Body mRNA": [
- [
- "249",
- "UAB_DrosWB_LC_RMA_1009",
- "UAB Whole body D.m. mRNA control (Oct09) RMA"
- ],
- [
- "250",
- "UAB_DrosWB_LE_RMA_1009",
- "UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA"
- ]
- ]
- }
- },
- "human": {
- "AD-cases-controls": {
- "Brain mRNA": [
- [
- "314",
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "313",
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "233",
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "232",
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ]
- ]
- },
- "AD-cases-controls-Myers": {
- "Brain mRNA": [
- [
- "234",
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain All Cases Myers (Apr09) RankInv"
- ],
- [
- "290",
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "289",
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ]
- ],
- "Genotypes": [
- [
- "None",
- "AD-cases-controls-MyersGeno",
- "AD-cases-controls-Myers Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "AD-cases-controls-MyersPublish",
- "AD-cases-controls-Myers Published Phenotypes"
- ]
- ]
- },
- "Aging-Brain-UCI": {
- "Entorhinal Cortex mRNA": [
- [
- "460",
- "UCI_EC_0913",
- "GSE11882 UCI Human Entorhinal Cortex Affy U133 Plus2 (Sep13) RMA"
- ]
- ],
- "Hippocampus mRNA": [
- [
- "461",
- "UCI_HC_0913",
- "GSE11882 UCI Human Hippocampus Affy U133 Plus2 (Sep13) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "Aging-Brain-UCIPublish",
- "Aging-Brain-UCI Published Phenotypes"
- ]
- ],
- "Postcentral Gyrus mRNA": [
- [
- "462",
- "UCI_PCG_0913",
- "GSE11882 UCI Human Postcentral Gyrus Affy U133 Plus2 (Sep13) RMA"
- ]
- ],
- "Superior Frontal Gyrus mRNA": [
- [
- "463",
- "UCI_SG_0913",
- "GSE11882 UCI Human Superior Frontal Gyrus Affy U133 Plus2 (Sep13) RMA"
- ]
- ]
- },
- "Brain-Normal-NIH-Gibbs": {
- "Cerebellum mRNA": [
- [
- "481",
- "GSE15745-GPL6104_Cer0510",
- "GSE15745 NIH Human Brain Cerebellum ILM humanRef-8 v2.0 (May10) RankInv"
- ]
- ],
- "Pons mRNA": [
- [
- "484",
- "GSE15745-GPL6104_Po0510",
- "GSE15745 NIH Human Brain Pons ILM humanRef-8 v2.0 (May10) RankInv"
- ]
- ],
- "Prefrontal Cortex mRNA": [
- [
- "482",
- "GSE15745-GPL6104_PFC0510",
- "GSE15745 NIH Human Brain Prefrontal Cortex ILM humanRef-8 v2.0 (May10) RankInv"
- ]
- ],
- "Temporal Cerebral Wall mRNA": [
- [
- "483",
- "GSE15745-GPL6104_TC0510",
- "GSE15745 NIH Human Brain Temporal Cerebral ILM humanRef-8 v2.0 (May10) RankInv"
- ]
- ]
- },
- "CANDLE": {
- "Methylation": [
- [
- "423",
- "CANDLE_Meth27_0313",
- "CANDLE Newborn Cord ILM HumanMethylation27 (Mar13)*"
- ],
- [
- "422",
- "CANDLE_Meth_0313",
- "CANDLE Newborn Cord ILM HumanMethylation27 (Mar13) Z-Score*"
- ]
- ],
- "Newborn Cord Blood mRNA": [
- [
- "324",
- "CANDLE_NB_0711",
- "CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT"
- ]
- ],
- "Phenotypes": [
- [
- "634",
- "CANDLEPublish",
- "CANDLE Published Phenotypes"
- ]
- ]
- },
- "CEPH-2004": {
- "Lymphoblast B-cell mRNA": [
- [
- "241",
- "UT_CEPH_RankInv0909",
- "UTHSC CEPH B-cells Illumina (Sep09) RankInv"
- ],
- [
- "215",
- "Human_1008",
- "Monks CEPH B-cells Agilent (Dec04) Log10Ratio"
- ]
- ]
- },
- "GTEx": {
- "Adipose Tissue, Subcutaneous mRNA": [
- [
- "580",
- "GTEx_log2_Subcu_0314",
- "GTEx Human Subcutaneous (Mar14) RPKM Log2"
- ],
- [
- "530",
- "GTEx_Subcu_0414",
- "GTEx Human Subcutaneous (Apr14) RPKM"
- ]
- ],
- "Adipose Tissue, Visceral mRNA": [
- [
- "587",
- "GTEx_log2_Visce_0314",
- "GTEx Human Visceral (Mar14) RPKM Log2"
- ],
- [
- "537",
- "GTEx_Visce_0414",
- "GTEx Human Visceral (Apr14) RPKM"
- ]
- ],
- "Adrenal Gland mRNA": [
- [
- "545",
- "GTEx_log2_Adren_0314",
- "GTEx Human Adrenal Gland (Mar14) RPKM Log2"
- ],
- [
- "495",
- "GTEx_Adren_0414",
- "GTEx Human Adrenal Gland (Apr14) RPKM"
- ]
- ],
- "Amygdala mRNA": [
- [
- "542",
- "GTEx_log2_AMY_0314",
- "GTEx Human Amygdala (Mar14) RPKM Log2"
- ],
- [
- "492",
- "GTEx_AMY_0314",
- "GTEx Human Amygdala (Mar14) RPKM"
- ]
- ],
- "Anterior Cingulate Cortex mRNA": [
- [
- "546",
- "GTEx_log2_Anter_0314",
- "GTEx Human Anterior Cingulate Cortex (Mar14) RPKM Log2"
- ],
- [
- "496",
- "GTEx_Anter_0414",
- "GTEx Human Anterior Cingulate Cortex (Apr14) RPKM"
- ]
- ],
- "Aorta mRNA": [
- [
- "547",
- "GTEx_log2_Aorta_0314",
- "GTEx Human Aorta (Mar14) RPKM Log2"
- ],
- [
- "497",
- "GTEx_Aorta_0414",
- "GTEx Human Aorta (Apr14) RPKM"
- ]
- ],
- "Blood, Cells - EBV-Transformed Lymphocytes mRNA": [
- [
- "548",
- "GTEx_log2_Blood_0314",
- "GTEx Human Blood, Cells - EBV-Transformed Lymphocytes (Mar14) RPKM Log2"
- ],
- [
- "498",
- "GTEx_Blood_0414",
- "GTEx Human Blood, Cells - EBV-Transformed Lymphocytes (Apr14) RPKM"
- ]
- ],
- "Breast - Mammary Tissue mRNA": [
- [
- "549",
- "GTEx_log2_Breas_0314",
- "GTEx Human Breast - Mammary Tissue (Mar14) RPKM Log2"
- ],
- [
- "499",
- "GTEx_Breas_0414",
- "GTEx Human Breast - Mammary Tissue (Apr14) RPKM"
- ]
- ],
- "Caudate mRNA": [
- [
- "550",
- "GTEx_log2_Cauda_0314",
- "GTEx Human Caudate (Mar14) RPKM Log2"
- ],
- [
- "500",
- "GTEx_Cauda_0414",
- "GTEx Human Caudate (Apr14) RPKM"
- ]
- ],
- "Cells - EBV-Transformed Lymphocytes mRNA": [
- [
- "551",
- "GTEx_log2_CellsEBV_0314",
- "GTEx Human Cells - EBV-Transformed Lymphocytes (Mar14) RPKM Log2"
- ],
- [
- "501",
- "GTEx_CellsEBV_0414",
- "GTEx Human Cells - EBV-Transformed Lymphocytes (Apr14) RPKM"
- ]
- ],
- "Cells - Leukemia Cell Line (CML) mRNA": [
- [
- "552",
- "GTEx_log2_CellsLe_0314",
- "GTEx Human Cells - Leukemia Cell Line (CML) (Mar14) RPKM Log2"
- ],
- [
- "502",
- "GTEx_CellsLe_0414",
- "GTEx Human Cells - Leukemia Cell Line (CML) (Apr14) RPKM"
- ]
- ],
- "Cells - Transformed Fibroblasts mRNA": [
- [
- "553",
- "GTEx_log2_CellsTr_0314",
- "GTEx Human Cells - Transformed Fibroblasts (Mar14) RPKM Log2"
- ],
- [
- "503",
- "GTEx_CellsTr_0414",
- "GTEx Human Cells - Transformed Fibroblasts (Apr14) RPKM"
- ]
- ],
- "Cerebellar Cortex mRNA": [
- [
- "554",
- "GTEx_log2_CerebC_0314",
- "GTEx Human Cerebellar Cortex (Mar14) RPKM Log2"
- ],
- [
- "504",
- "GTEx_CerebC_0414",
- "GTEx Human Cerebellar Cortex (Apr14) RPKM"
- ]
- ],
- "Cerebellar Hemisphere mRNA": [
- [
- "555",
- "GTEx_log2_CerebH_0314",
- "GTEx Human Cerebellar Hemisphere (Mar14) RPKM Log2"
- ],
- [
- "505",
- "GTEx_CerebH_0414",
- "GTEx Human Cerebellar Hemisphere (Apr14) RPKM"
- ]
- ],
- "Cerebellum mRNA": [
- [
- "543",
- "GTEx_log2_CER_0314",
- "GTEx Human Cerebellum (Mar14) RPKM Log2"
- ],
- [
- "493",
- "GTEx_CER_0314",
- "GTEx Human Cerebellum (Mar14) RPKM"
- ]
- ],
- "Colon - Transverse mRNA": [
- [
- "556",
- "GTEx_log2_Colon_0314",
- "GTEx Human Colon - Transverse (Mar14) RPKM Log2"
- ],
- [
- "506",
- "GTEx_Colon_0414",
- "GTEx Human Colon - Transverse (Apr14) RPKM"
- ]
- ],
- "Coronary mRNA": [
- [
- "557",
- "GTEx_log2_Coron_0314",
- "GTEx Human Coronary (Mar14) RPKM Log2"
- ],
- [
- "507",
- "GTEx_Coron_0414",
- "GTEx Human Coronary (Apr14) RPKM"
- ]
- ],
- "Esophagus - Mucosa mRNA": [
- [
- "558",
- "GTEx_log2_EsophMuc_0314",
- "GTEx Human Esophagus - Mucosa (Mar14) RPKM Log2"
- ],
- [
- "508",
- "GTEx_EsophMuc_0414",
- "GTEx Human Esophagus - Mucosa (Apr14) RPKM"
- ]
- ],
- "Esophagus - Muscularis mRNA": [
- [
- "559",
- "GTEx_log2_EsophMus_0314",
- "GTEx Human Esophagus - Muscularis (Mar14) RPKM Log2"
- ],
- [
- "509",
- "GTEx_EsophMus_0414",
- "GTEx Human Esophagus - Muscularis (Apr14) RPKM"
- ]
- ],
- "Fallopian Tube mRNA": [
- [
- "560",
- "GTEx_log2_Fallo_0314",
- "GTEx Human Fallopian Tube (Mar14) RPKM Log2"
- ],
- [
- "510",
- "GTEx_Fallo_0414",
- "GTEx Human Fallopian Tube (Apr14) RPKM"
- ]
- ],
- "Frontal Cortex mRNA": [
- [
- "561",
- "GTEx_log2_Front_0314",
- "GTEx Human Frontal Cortex (Mar14) RPKM Log2"
- ],
- [
- "511",
- "GTEx_Front_0414",
- "GTEx Human Frontal Cortex (Apr14) RPKM"
- ]
- ],
- "Heart - Atrial Appendage mRNA": [
- [
- "562",
- "GTEx_log2_HeartAt_0314",
- "GTEx Human Heart - Atrial Appendage (Mar14) RPKM Log2"
- ],
- [
- "512",
- "GTEx_HeartAt_0414",
- "GTEx Human Heart - Atrial Appendage (Apr14) RPKM"
- ]
- ],
- "Heart - Left Ventricle mRNA": [
- [
- "563",
- "GTEx_log2_HeartLV_0314",
- "GTEx Human Heart - Left Ventricle (Mar14) RPKM Log2"
- ],
- [
- "513",
- "GTEx_HeartLV_0414",
- "GTEx Human Heart - Left Ventricle (Apr14) RPKM"
- ]
- ],
- "Hippocampus mRNA": [
- [
- "544",
- "GTEx_log2_HIP_0314",
- "GTEx Human Hippocampus (Mar14) RPKM Log2"
- ],
- [
- "494",
- "GTEx_HIP_0314",
- "GTEx Human Hippocampus (Mar14) RPKM"
- ]
- ],
- "Hypothalamus mRNA": [
- [
- "564",
- "GTEx_log2_Hypot_0314",
- "GTEx Human Hypothalamus (Mar14) RPKM Log2"
- ],
- [
- "514",
- "GTEx_Hypot_0414",
- "GTEx Human Hypothalamus (Apr14) RPKM"
- ]
- ],
- "Kidney mRNA": [
- [
- "565",
- "GTEx_log2_Kidne_0314",
- "GTEx Human Kidney (Mar14) RPKM Log2"
- ],
- [
- "515",
- "GTEx_Kidne_0414",
- "GTEx Human Kidney (Apr14) RPKM"
- ]
- ],
- "Liver mRNA": [
- [
- "566",
- "GTEx_log2_Liver_0314",
- "GTEx Human Liver (Mar14) RPKM Log2"
- ],
- [
- "516",
- "GTEx_Liver_0414",
- "GTEx Human Liver (Apr14) RPKM"
- ]
- ],
- "Lung mRNA": [
- [
- "567",
- "GTEx_log2_Lung_0314",
- "GTEx Human Lung (Mar14) RPKM Log2"
- ],
- [
- "517",
- "GTEx_Lung _0414",
- "GTEx Human Lung (Apr14) RPKM"
- ]
- ],
- "Muscle mRNA": [
- [
- "568",
- "GTEx_log2_Muscle_0314",
- "GTEx Human Muscle (Mar14) RPKM Log2"
- ],
- [
- "518",
- "GTEx_Muscl_0414",
- "GTEx Human Muscle (Apr14) RPKM"
- ]
- ],
- "Nerve - Tibial mRNA": [
- [
- "569",
- "GTEx_log2_Nerve_0314",
- "GTEx Human Nerve - Tibial (Mar14) RPKM Log2"
- ],
- [
- "519",
- "GTEx_Nerve_0414",
- "GTEx Human Nerve - Tibial (Apr14) RPKM"
- ]
- ],
- "Nucleus Accumbens mRNA": [
- [
- "570",
- "GTEx_log2_Nucle_0314",
- "GTEx Human Nucleus Accumbens (Mar14) RPKM Log2"
- ],
- [
- "520",
- "GTEx_Nucle_0414",
- "GTEx Human Nucleus Accumbens (Apr14) RPKM"
- ]
- ],
- "Ovary mRNA": [
- [
- "571",
- "GTEx_log2_Ovary_0314",
- "GTEx Human Ovary (Mar14) RPKM Log2"
- ],
- [
- "521",
- "GTEx_Ovary_0414",
- "GTEx Human Ovary (Apr14) RPKM"
- ]
- ],
- "Pancreas mRNA": [
- [
- "572",
- "GTEx_log2_Pancr_0314",
- "GTEx Human Pancreas (Mar14) RPKM Log2"
- ],
- [
- "522",
- "GTEx_Pancr_0414",
- "GTEx Human Pancreas (Apr14) RPKM"
- ]
- ],
- "Pituitary Gland mRNA": [
- [
- "573",
- "GTEx_log2_Pitui_0314",
- "GTEx Human Pituitary (Mar14) RPKM Log2"
- ],
- [
- "523",
- "GTEx_Pitui_0414",
- "GTEx Human Pituitary (Apr14) RPKM"
- ]
- ],
- "Prostate mRNA": [
- [
- "574",
- "GTEx_log2_Prost_0314",
- "GTEx Human Prostate (Mar14) RPKM Log2"
- ],
- [
- "524",
- "GTEx_Prost_0414",
- "GTEx Human Prostate (Apr14) RPKM"
- ]
- ],
- "Putamen mRNA": [
- [
- "575",
- "GTEx_log2_Putam_0314",
- "GTEx Human Putamen (Mar14) RPKM Log2"
- ],
- [
- "525",
- "GTEx_Putam_0414",
- "GTEx Human Putamen (Apr14) RPKM"
- ]
- ],
- "Skin - Not Sun Exposed (Suprapubic) mRNA": [
- [
- "576",
- "GTEx_log2_SkinN_0314",
- "GTEx Human Skin-Not Sun Exposed (Suprapubic) (Mar14) RPKM Log2"
- ],
- [
- "526",
- "GTEx_SkinN_0414",
- "GTEx Human Skin-Not Sun Exposed (Suprapubic) (Apr14) RPKM"
- ]
- ],
- "Skin - Sun Exposed (Lower leg) mRNA": [
- [
- "577",
- "GTEx_log2_SkinE_0314",
- "GTEx Human Skin-Sun Exposed (Lower leg) (Mar14) RPKM Log2"
- ],
- [
- "527",
- "GTEx_SkinE_0414",
- "GTEx Human Skin-Sun Exposed (Lower leg) (Apr14) RPKM"
- ]
- ],
- "Spinal Cord mRNA": [
- [
- "578",
- "GTEx_log2_Spina_0314",
- "GTEx Human Spinal Cord (Mar14) RPKM Log2"
- ],
- [
- "528",
- "GTEx_Spina_0414",
- "GTEx Human Spinal Cord (Apr14) RPKM"
- ]
- ],
- "Stomach mRNA": [
- [
- "579",
- "GTEx_log2_Stoma_0314",
- "GTEx Human Stomach (Mar14) RPKM Log2"
- ],
- [
- "529",
- "GTEx_Stoma_0414",
- "GTEx Human Stomach (Apr14) RPKM"
- ]
- ],
- "Substantia Nigra mRNA": [
- [
- "581",
- "GTEx_log2_Subst_0314",
- "GTEx Human Substantia Nigra (Mar14) RPKM Log2"
- ],
- [
- "531",
- "GTEx_Subst_0414",
- "GTEx Human Substantia Nigra (Apr14) RPKM"
- ]
- ],
- "Testis mRNA": [
- [
- "582",
- "GTEx_log2_Testi_0314",
- "GTEx Human Testis (Mar14) RPKM Log2"
- ],
- [
- "532",
- "GTEx_Testi_0414",
- "GTEx Human Testis (Apr14) RPKM"
- ]
- ],
- "Thyroid mRNA": [
- [
- "583",
- "GTEx_log2_Thyro_0314",
- "GTEx Human Thyroid (Mar14) RPKM Log2"
- ],
- [
- "533",
- "GTEx_Thyro_0414",
- "GTEx Human Thyroid (Apr14) RPKM"
- ]
- ],
- "Tibial mRNA": [
- [
- "584",
- "GTEx_log2_Tibial_0314",
- "GTEx Human Tibial (Mar14) RPKM Log2"
- ],
- [
- "534",
- "GTEx_Tibia_0414",
- "GTEx Human Tibial (Apr14) RPKM"
- ]
- ],
- "Uterus mRNA": [
- [
- "585",
- "GTEx_log2_Uterus_0314",
- "GTEx Human Uterus (Mar14) RPKM Log2"
- ],
- [
- "535",
- "GTEx_Uteru_0414",
- "GTEx Human Uterus (Apr14) RPKM"
- ]
- ],
- "Vagina mRNA": [
- [
- "586",
- "GTEx_log2_Vagin_0314",
- "GTEx Human Vagina (Mar14) RPKM Log2"
- ],
- [
- "536",
- "GTEx_Vagin_0414",
- "GTEx Human Vagina (Apr14) RPKM"
- ]
- ],
- "Whole Blood mRNA": [
- [
- "588",
- "GTEx_log2_WholeB_0314",
- "GTEx Human Whole Blood (Mar14) RPKM Log2"
- ],
- [
- "538",
- "GTEx_Whole_0414",
- "GTEx Human Whole Blood (Apr14) RPKM"
- ]
- ]
- },
- "GTEx_v5": {
- "Adipose Tissue, Subcutaneous mRNA": [
- [
- "718",
- "GTEXv5_AdipSub_0915",
- "GTEXv5 Human Adipose Subcutaneous RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Adipose Tissue, Visceral mRNA": [
- [
- "719",
- "GTEXv5_AdiVis_0915",
- "GTEXv5 Human Adipose Visceral Omentum RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Adrenal Gland mRNA": [
- [
- "720",
- "GTEXv5_AdrGla_0915",
- "GTEXv5 Human Adrenal Gland RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Amygdala mRNA": [
- [
- "725",
- "GTEXv5_Amy_0915",
- "GTEXv5 Human Brain Amygdala RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Anterior Cingulate Cortex mRNA": [
- [
- "726",
- "GTEXv5_AntCtx_0915",
- "GTEXv5 Human Brain Anterior Cingulate Cortex BA24 RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Aorta mRNA": [
- [
- "721",
- "GTEXv5_ArtAor_0915",
- "GTEXv5 Human Artery Aorta RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Bladder mRNA": [
- [
- "724",
- "GTEXv5_Bla_0915",
- "GTEXv5 Human Bladder RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Bone Marrow mRNA": [
- [
- "740",
- "GTEXv5_BM_0915",
- "GTEXv5 Human Cells-Leukemia Cell Line CML RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Breast - Mammary Tissue mRNA": [
- [
- "738",
- "GTEXv5_BrMa_0915",
- "GTEXv5 Human Breast Mammary Tissue RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Caudate mRNA": [
- [
- "727",
- "GTEXv5_BrCa_0915",
- "GTEXv5 Human Brain Caudate Basal Ganglia RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Cells - EBV-Transformed Lymphocytes mRNA": [
- [
- "739",
- "GTEXv5_EBV_0915",
- "GTEXv5 Human Cells-EBV-Transformed Lymphocytes RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Cells - Transformed Fibroblasts mRNA": [
- [
- "741",
- "GTEXv5_CTF_0915",
- "GTEXv5 Human Cells-Transformed Fibroblasts RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Cerebellar Cortex mRNA": [
- [
- "730",
- "GTEXv5_BrCtx_0915",
- "GTEXv5 Human Brain Cortex RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Cerebellar Hemisphere mRNA": [
- [
- "728",
- "GTEXv5_CerH_0915",
- "GTEXv5 Human Brain Cerebellar Hemisphere RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Cerebellum mRNA": [
- [
- "729",
- "GTEXv5_BrCe_0915",
- "GTEXv5 Human Brain Cerebellum RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Cervix mRNA": [
- [
- "742",
- "GTEXv5_CerEct_0915",
- "GTEXv5 Human Cervix-Ectocervix RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Colon - Sigmoid mRNA": [
- [
- "743",
- "GTEXv5_ColSig_0915",
- "GTEXv5 Human Colon-Sigmoid RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Colon - Transverse mRNA": [
- [
- "744",
- "GTEXv5_ColTra_0915",
- "GTEXv5 Human Colon-Transverse RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Coronary mRNA": [
- [
- "722",
- "GTEXv5_ArtCor_0915",
- "GTEXv5 Human Artery Coronary RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Esophagus - Gastroesophageal mRNA": [
- [
- "745",
- "GTEXv5_GastJun_0915",
- "GTEXv5 Human Esophagus - Gastroesophageal Junction RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Esophagus - Mucosa mRNA": [
- [
- "746",
- "GTEXv5_EsoMu_0915",
- "GTEXv5 Human Esophagus - Mucosa RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Esophagus - Muscularis mRNA": [
- [
- "747",
- "GTEXv5_EsoMus_0915",
- "GTEXv5 Human Esophagus - Muscularis RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Fallopian Tube mRNA": [
- [
- "748",
- "GTEXv5_Fatu_0915",
- "GTEXv5 Human Fallopian Tube RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Frontal Cortex mRNA": [
- [
- "731",
- "GTEXv5_BrFr_0915",
- "GTEXv5 Human Brain Frontal Cortex BA9 RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Heart - Atrial Appendage mRNA": [
- [
- "749",
- "GTEXv5_HAA_0915",
- "GTEXv5 Human Heart - Atrial Appendage RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Heart - Left Ventricle mRNA": [
- [
- "750",
- "GTEXv5_LV_0915",
- "GTEXv5 Human Heart - Left Ventricle RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Hippocampus mRNA": [
- [
- "732",
- "GTEXv5_Hip_0915",
- "GTEXv5 Human Brain Hippocampus RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Hypothalamus mRNA": [
- [
- "733",
- "GTEXv5_Hiptha_0915",
- "GTEXv5 Human Brain Hypothalamus RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Kidney mRNA": [
- [
- "751",
- "GTEXv5_Kidn_0915",
- "GTEXv5 Human Kidney - Cortex RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Liver mRNA": [
- [
- "752",
- "GTEXv5_Liv_0915",
- "GTEXv5 Human Liver RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Lung mRNA": [
- [
- "753",
- "GTEXv5_Lung_0915",
- "GTEXv5 Human Lung RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Muscle mRNA": [
- [
- "754",
- "GTEXv5_MuSk_0915",
- "GTEXv5 Human Muscle - Skeletal RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Nerve - Tibial mRNA": [
- [
- "755",
- "GTEXv5_Tib_0915",
- "GTEXv5 Human Nerve - Tibial RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Nucleus Accumbens mRNA": [
- [
- "734",
- "GTEXv5_NuAcc_0915",
- "GTEXv5 Human Brain Nucleus Accumbens Basal Ganglia RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Ovary mRNA": [
- [
- "756",
- "GTEXv5_Ov_0915",
- "GTEXv5 Human Ovary RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Pancreas mRNA": [
- [
- "757",
- "GTEXv5_Panc_0915",
- "GTEXv5 Human Pancreas RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "GTEx_v5Publish",
- "GTEx_v5 Phenotypes"
- ]
- ],
- "Pituitary Gland mRNA": [
- [
- "758",
- "GTEXv5_Pit_0915",
- "GTEXv5 Human Pituitary RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Prostate mRNA": [
- [
- "759",
- "GTEXv5_Prost_0915",
- "GTEXv5 Human Prostate RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Putamen mRNA": [
- [
- "735",
- "GTEXv5_PutB_0915",
- "GTEXv5 Human Brain Putamen Basal Ganglia RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Salivary Gland mRNA": [
- [
- "760",
- "GTEXv5_SalGl_0915",
- "GTEXv5 Human Salivary Gland Minor RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Skin - Not Sun Exposed (Suprapubic) mRNA": [
- [
- "761",
- "GTEXv5_SkN_0915",
- "GTEXv5 Human Skin-Not Sun Exposed-Suprapubic RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Skin - Sun Exposed (Lower leg) mRNA": [
- [
- "762",
- "GTEXv5_SkS_0915",
- "GTEXv5 Human Skin-Sun Exposed-Lower Leg RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Small Intestine - Terminal Ileum mRNA": [
- [
- "763",
- "GTEXv5_SInt_0915",
- "GTEXv5 Human Small Intestine - Terminal Ileum RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Spinal Cord mRNA": [
- [
- "736",
- "GTEXv5_SpCo_0915",
- "GTEXv5 Human Brain Spinal Cord Cervical C-1 RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Spleen mRNA": [
- [
- "764",
- "GTEXv5_Sple_0915",
- "GTEXv5 Human Spleen RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Stomach mRNA": [
- [
- "765",
- "GTEXv5_Sto_0915",
- "GTEXv5 Human Stomach RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Substantia Nigra mRNA": [
- [
- "737",
- "GTEXv5_SubN_0915",
- "GTEXv5 Human Brain Substantia Nigra RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Testis mRNA": [
- [
- "766",
- "GTEXv5_Test_0915",
- "GTEXv5 Human Testis RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Thyroid mRNA": [
- [
- "767",
- "GTEXv5_Thy_0915",
- "GTEXv5 Human Thyroid RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Tibial mRNA": [
- [
- "723",
- "GTEXv5_ArtTib_0915",
- "GTEXv5 Human Artery Tibial RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Uterus mRNA": [
- [
- "768",
- "GTEXv5_Ut_0915",
- "GTEXv5 Human Uterus RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Vagina mRNA": [
- [
- "769",
- "GTEXv5_Vag_0915",
- "GTEXv5 Human Vagina RefSeq (Sep15) RPKM log2"
- ]
- ],
- "Whole Blood mRNA": [
- [
- "770",
- "GTEXv5_Wbl_0915",
- "GTEXv5 Human Whole Blood RefSeq (Sep15) RPKM log2"
- ]
- ]
- },
- "GTEx_v8": {
- "Adipose Tissue, Subcutaneous mRNA": [
- [
- "950",
- "GTEXv8_AdipSub_tpm_0220",
- "GTEXv8 Human Adipose Subcutaneous RNA-Seq (Feb20) TPM log2"
- ],
- [
- "901",
- "GTEXv8_AdipSub_0220",
- "GTEXv8 Human Adipose Subcutaneous RNA-Seq (Feb20) log2"
- ]
- ],
- "Adipose Tissue, Visceral mRNA": [
- [
- "951",
- "GTEXv8_AdiVis_tpm_0220",
- "GTEXv8 Human Adipose Visceral Omentum RNA-Seq (Feb20) TPM log2"
- ],
- [
- "902",
- "GTEXv8_AdiVis_0220",
- "GTEXv8 Human Adipose Visceral Omentum RNA-Seq (Feb20) log2"
- ]
- ],
- "Adrenal Gland mRNA": [
- [
- "952",
- "GTEXv8_AdrGla_tpm_0220",
- "GTEXv8 Human Adrenal Gland RNA-Seq (Feb20) TPM log2"
- ],
- [
- "903",
- "GTEXv8_AdrGla_0220",
- "GTEXv8 Human Adrenal Gland RNA-Seq (Feb20) log2"
- ]
- ],
- "Amygdala mRNA": [
- [
- "956",
- "GTEXv8_Amy_tpm_0220",
- "GTEXv8 Human Brain Amygdala RNA-Seq (Feb20) TPM log2"
- ],
- [
- "907",
- "GTEXv8_Amy_0220",
- "GTEXv8 Human Brain Amygdala RNA-Seq (Feb20) log2"
- ]
- ],
- "Anterior Cingulate Cortex mRNA": [
- [
- "957",
- "GTEXv8_AntCtx_tpm_0220",
- "GTEXv8 Human Brain Anterior cingulate cortex BA24 RNA-Seq (Feb20) TPM log2"
- ],
- [
- "908",
- "GTEXv8_AntCtx_0220",
- "GTEXv8 Human Brain Anterior cingulate cortex BA24 RNA-Seq (Feb20) log2"
- ]
- ],
- "Aorta mRNA": [
- [
- "953",
- "GTEXv8_ArtAor_tpm_0220",
- "GTEXv8 Human Artery Aorta RNA-Seq (Feb20) TPM log2"
- ],
- [
- "904",
- "GTEXv8_ArtAor_0220",
- "GTEXv8 Human Artery Aorta RNA-Seq (Feb20) log2"
- ]
- ],
- "Breast - Mammary Tissue mRNA": [
- [
- "969",
- "GTEXv8_BrMa_tpm_0220",
- "GTEXv8 Human Breast Mammary Tissue RNA-Seq (Feb20) TPM log2"
- ],
- [
- "920",
- "GTEXv8_BrMa_0220",
- "GTEXv8 Human Breast Mammary Tissue RNA-Seq (Feb20) log2"
- ]
- ],
- "Caudate mRNA": [
- [
- "958",
- "GTEXv8_BrCa_tpm_0220",
- "GTEXv8 Human Brain Caudate basal ganglia RNA-Seq (Feb20) TPM log2"
- ],
- [
- "909",
- "GTEXv8_BrCa_0220",
- "GTEXv8 Human Brain Caudate basal ganglia RNA-Seq (Feb20) log2"
- ]
- ],
- "Cells - EBV-Transformed Lymphocytes mRNA": [
- [
- "970",
- "GTEXv8_EBV_tpm_0220",
- "GTEXv8 Human Cells-EBV-transformed lymphocytes RNA-Seq (Feb20) TPM log2"
- ],
- [
- "921",
- "GTEXv8_EBV_0220",
- "GTEXv8 Human Cells-EBV-transformed lymphocytes RNA-Seq (Feb20) log2"
- ]
- ],
- "Cells - Transformed Fibroblasts mRNA": [
- [
- "971",
- "GTEXv8_CTF_tpm_0220",
- "GTEXv8 Human Cells-Transformed fibroblasts RNA-Seq (Feb20) TPM log2"
- ],
- [
- "922",
- "GTEXv8_CTF_0220",
- "GTEXv8 Human Cells-Transformed fibroblasts RNA-Seq (Feb20) log2"
- ]
- ],
- "Cerebellar Cortex mRNA": [
- [
- "961",
- "GTEXv8_BrCtx_tpm_0220",
- "GTEXv8 Human Brain Cortex RNA-Seq (Feb20) TPM log2"
- ],
- [
- "912",
- "GTEXv8_BrCtx_0220",
- "GTEXv8 Human Brain Cortex RNA-Seq (Feb20) log2"
- ]
- ],
- "Cerebellar Hemisphere mRNA": [
- [
- "959",
- "GTEXv8_CerH_tpm_0220",
- "GTEXv8 Human Brain Cerebellar Hemisphere RNA-Seq (Feb20) TPM log2"
- ],
- [
- "910",
- "GTEXv8_CerH_0220",
- "GTEXv8 Human Brain Cerebellar Hemisphere RNA-Seq (Feb20) log2"
- ]
- ],
- "Cerebellum mRNA": [
- [
- "960",
- "GTEXv8_BrCe_tpm_0220",
- "GTEXv8 Human Brain Cerebellum RNA-Seq (Feb20) TPM log2"
- ],
- [
- "911",
- "GTEXv8_BrCe_0220",
- "GTEXv8 Human Brain Cerebellum RNA-Seq (Feb20) log2"
- ]
- ],
- "Colon - Sigmoid mRNA": [
- [
- "972",
- "GTEXv8_ColSig_tpm_0220",
- "GTEXv8 Human Colon-Sigmoid RNA-Seq (Feb20) TPM log2"
- ],
- [
- "923",
- "GTEXv8_ColSig_0220",
- "GTEXv8 Human Colon-Sigmoid RNA-Seq (Feb20) log2"
- ]
- ],
- "Colon - Transverse mRNA": [
- [
- "973",
- "GTEXv8_ColTra_tpm_0220",
- "GTEXv8 Human Colon-Transverse RNA-Seq (Feb20) TPM log2"
- ],
- [
- "924",
- "GTEXv8_ColTra_0220",
- "GTEXv8 Human Colon-Transverse RNA-Seq (Feb20) log2"
- ]
- ],
- "Coronary mRNA": [
- [
- "954",
- "GTEXv8_ArtCor_tpm_0220",
- "GTEXv8 Human Artery Coronary RNA-Seq (Feb20) TPM log2"
- ],
- [
- "905",
- "GTEXv8_ArtCor_0220",
- "GTEXv8 Human Artery Coronary RNA-Seq (Feb20) log2"
- ]
- ],
- "Esophagus - Gastroesophageal mRNA": [
- [
- "974",
- "GTEXv8_GastJun_tpm_0220",
- "GTEXv8 Human Esophagus - Gastroesophageal Junction RNA-Seq (Feb20) TPM log2"
- ],
- [
- "925",
- "GTEXv8_GastJun_0220",
- "GTEXv8 Human Esophagus - Gastroesophageal Junction RNA-Seq (Feb20) log2"
- ]
- ],
- "Esophagus - Mucosa mRNA": [
- [
- "975",
- "GTEXv8_EsoMu_tpm_0220",
- "GTEXv8 Human Esophagus-Mucosa RNA-Seq (Feb20) TPM log2"
- ],
- [
- "926",
- "GTEXv8_EsoMu_0220",
- "GTEXv8 Human Esophagus-Mucosa RNA-Seq (Feb20) log2"
- ]
- ],
- "Esophagus - Muscularis mRNA": [
- [
- "976",
- "GTEXv8_EsoMus_tpm_0220",
- "GTEXv8 Human Esophagus-Muscularis RNA-Seq (Feb20) TPM log2"
- ],
- [
- "927",
- "GTEXv8_EsoMus_0220",
- "GTEXv8 Human Esophagus-Muscularis RNA-Seq (Feb20) log2"
- ]
- ],
- "Frontal Cortex mRNA": [
- [
- "962",
- "GTEXv8_BrFr_tpm_0220",
- "GTEXv8 Human Brain Frontal Cortex BA9 RNA-Seq (Feb20) TPM log2"
- ],
- [
- "913",
- "GTEXv8_BrFr_0220",
- "GTEXv8 Human Brain Frontal Cortex BA9 RNA-Seq (Feb20) log2"
- ]
- ],
- "Heart - Atrial Appendage mRNA": [
- [
- "977",
- "GTEXv8_HAA_tpm_0220",
- "GTEXv8 Human Heart-Atrial Appendage RNA-Seq (Feb20) TPM log2"
- ],
- [
- "928",
- "GTEXv8_HAA_0220",
- "GTEXv8 Human Heart-Atrial Appendage RNA-Seq (Feb20) log2"
- ]
- ],
- "Heart - Left Ventricle mRNA": [
- [
- "978",
- "GTEXv8_LV_tpm_0220",
- "GTEXv8 Human Heart-Left Ventricle RNA-Seq (Feb20) TPM log2"
- ],
- [
- "929",
- "GTEXv8_LV_0220",
- "GTEXv8 Human Heart-Left Ventricle RNA-Seq (Feb20) log2"
- ]
- ],
- "Hippocampus mRNA": [
- [
- "963",
- "GTEXv8_Hip_tpm_0220",
- "GTEXv8 Human Brain Hippocampus RNA-Seq (Feb20) TPM log2"
- ],
- [
- "914",
- "GTEXv8_Hip_0220",
- "GTEXv8 Human Brain Hippocampus RNA-Seq (Feb20) log2"
- ]
- ],
- "Hypothalamus mRNA": [
- [
- "964",
- "GTEXv8_Hiptha_tpm_0220",
- "GTEXv8 Human Brain Hypothalamus RNA-Seq (Feb20) TPM log2"
- ],
- [
- "915",
- "GTEXv8_Hiptha_0220",
- "GTEXv8 Human Brain Hypothalamus RNA-Seq (Feb20) log2"
- ]
- ],
- "Kidney mRNA": [
- [
- "979",
- "GTEXv8_Kidn_tpm_0220",
- "GTEXv8 Human Kidney-Cortex RNA-Seq (Feb20) TPM log2"
- ],
- [
- "930",
- "GTEXv8_Kidn_0220",
- "GTEXv8 Human Kidney-Cortex RNA-Seq (Feb20) log2"
- ]
- ],
- "Liver mRNA": [
- [
- "980",
- "GTEXv8_Liv_tpm_0220",
- "GTEXv8 Human Liver RNA-Seq (Feb20) TPM log2"
- ],
- [
- "931",
- "GTEXv8_Liv_0220",
- "GTEXv8 Human Liver RNA-Seq (Feb20) log2"
- ]
- ],
- "Lung mRNA": [
- [
- "981",
- "GTEXv8_Lung_tpm_0220",
- "GTEXv8 Human Lung RNA-Seq (Feb20) TPM log2"
- ],
- [
- "932",
- "GTEXv8_Lung_0220",
- "GTEXv8 Human Lung RNA-Seq (Feb20) log2"
- ]
- ],
- "Muscle mRNA": [
- [
- "982",
- "GTEXv8_MuSk_tpm_0220",
- "GTEXv8 Human Muscle-Skeletal RNA-Seq (Feb20) TPM log2"
- ],
- [
- "933",
- "GTEXv8_MuSk_0220",
- "GTEXv8 Human Muscle-Skeletal RNA-Seq (Feb20) log2"
- ]
- ],
- "Nerve - Tibial mRNA": [
- [
- "983",
- "GTEXv8_Tib_tpm_0220",
- "GTEXv8 Human Nerve-Tibial RNA-Seq (Feb20) TPM log2"
- ],
- [
- "934",
- "GTEXv8_Tib_0220",
- "GTEXv8 Human Nerve-Tibial RNA-Seq (Feb20) log2"
- ]
- ],
- "Nucleus Accumbens mRNA": [
- [
- "965",
- "GTEXv8_NuAcc_tpm_0220",
- "GTEXv8 Human Brain Nucleus accumbens basal ganglia RNA-Seq (Feb20) TPM log2"
- ],
- [
- "916",
- "GTEXv8_NuAcc_0220",
- "GTEXv8 Human Brain Nucleus accumbens basal ganglia RNA-Seq (Feb20) log2"
- ]
- ],
- "Ovary mRNA": [
- [
- "984",
- "GTEXv8_Ov_tpm_0220",
- "GTEXv8 Human Ovary RNA-Seq (Feb20) TPM log2"
- ],
- [
- "935",
- "GTEXv8_Ov_0220",
- "GTEXv8 Human Ovary RNA-Seq (Feb20) log2"
- ]
- ],
- "Pancreas mRNA": [
- [
- "985",
- "GTEXv8_Panc_tpm_0220",
- "GTEXv8 Human Pancreas RNA-Seq (Feb20) TPM log2"
- ],
- [
- "936",
- "GTEXv8_Panc_0220",
- "GTEXv8 Human Pancreas RNA-Seq (Feb20) log2"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "GTEx_v8Publish",
- "GTEx_v8 Phenotypes"
- ]
- ],
- "Pituitary Gland mRNA": [
- [
- "986",
- "GTEXv8_Pit_tpm_0220",
- "GTEXv8 Human Pituitary RNA-Seq (Feb20) TPM log2"
- ],
- [
- "937",
- "GTEXv8_Pit_0220",
- "GTEXv8 Human Pituitary RNA-Seq (Feb20) log2"
- ]
- ],
- "Prostate mRNA": [
- [
- "987",
- "GTEXv8_Prost_tpm_0220",
- "GTEXv8 Human Prostate RNA-Seq (Feb20) TPM log2"
- ],
- [
- "938",
- "GTEXv8_Prost_0220",
- "GTEXv8 Human Prostate RNA-Seq (Feb20) log2"
- ]
- ],
- "Putamen mRNA": [
- [
- "966",
- "GTEXv8_PutB_tpm_0220",
- "GTEXv8 Human Brain Putamen basal ganglia RNA-Seq (Feb20) TPM log2"
- ],
- [
- "917",
- "GTEXv8_PutB_0220",
- "GTEXv8 Human Brain Putamen basal ganglia RNA-Seq (Feb20) log2"
- ]
- ],
- "Salivary Gland mRNA": [
- [
- "988",
- "GTEXv8_SalGl_tpm_0220",
- "GTEXv8 Human Salivary Gland Minor RNA-Seq (Feb20) TPM log2"
- ],
- [
- "939",
- "GTEXv8_SalGl_0220",
- "GTEXv8 Human Salivary Gland Minor RNA-Seq (Feb20) log2"
- ]
- ],
- "Skin - Not Sun Exposed (Suprapubic) mRNA": [
- [
- "989",
- "GTEXv8_SkN_tpm_0220",
- "GTEXv8 Human Skin-Not Sun Exposed-Suprapubic RNA-Seq (Feb20) TPM log2"
- ],
- [
- "940",
- "GTEXv8_SkN_0220",
- "GTEXv8 Human Skin-Not Sun Exposed-Suprapubic RNA-Seq (Feb20) log2"
- ]
- ],
- "Skin - Sun Exposed (Lower leg) mRNA": [
- [
- "990",
- "GTEXv8_SkS_tpm_0220",
- "GTEXv8 Human Skin-Sun Exposed-Lower leg RNA-Seq (Feb20) TPM log2"
- ],
- [
- "941",
- "GTEXv8_SkS_0220",
- "GTEXv8 Human Skin-Sun Exposed-Lower leg RNA-Seq (Feb20) log2"
- ]
- ],
- "Small Intestine - Terminal Ileum mRNA": [
- [
- "997",
- "GTEXv8_SInt_tpm_0220",
- "GTEXv8 Human Small Intestine - Terminal Ileum RNA-Seq (Feb20) TPM log2"
- ],
- [
- "948",
- "GTEXv8_SInt_0220",
- "GTEXv8 Human Small Intestine - Terminal Ileum RNA-Seq (Feb20) log2"
- ]
- ],
- "Spinal Cord mRNA": [
- [
- "967",
- "GTEXv8_SpCo_tpm_0220",
- "GTEXv8 Human Brain Spinal cord cervical c-1 RNA-Seq (Feb20) TPM log2"
- ],
- [
- "918",
- "GTEXv8_SpCo_0220",
- "GTEXv8 Human Brain Spinal cord cervical c-1 RNA-Seq (Feb20) log2"
- ]
- ],
- "Spleen mRNA": [
- [
- "991",
- "GTEXv8_Sple_tpm_0220",
- "GTEXv8 Human Spleen RNA-Seq (Feb20) TPM log2"
- ],
- [
- "942",
- "GTEXv8_Sple_0220",
- "GTEXv8 Human Spleen RNA-Seq (Feb20) log2"
- ]
- ],
- "Stomach mRNA": [
- [
- "992",
- "GTEXv8_Sto_tpm_0220",
- "GTEXv8 Human Stomach RNA-Seq (Feb20) TPM log2"
- ],
- [
- "943",
- "GTEXv8_Sto_0220",
- "GTEXv8 Human Stomach RNA-Seq (Feb20) log2"
- ]
- ],
- "Substantia Nigra mRNA": [
- [
- "968",
- "GTEXv8_SubN_tpm_0220",
- "GTEXv8 Human Brain Substantia nigra RNA-Seq (Feb20) TPM log2"
- ],
- [
- "919",
- "GTEXv8_SubN_0220",
- "GTEXv8 Human Brain Substantia nigra RNA-Seq (Feb20) log2"
- ]
- ],
- "Testis mRNA": [
- [
- "993",
- "GTEXv8_Test_tpm_0220",
- "GTEXv8 Human Testis RNA-Seq (Feb20) TPM log2"
- ],
- [
- "944",
- "GTEXv8_Test_0220",
- "GTEXv8 Human Testis RNA-Seq (Feb20) log2"
- ]
- ],
- "Thyroid mRNA": [
- [
- "994",
- "GTEXv8_Thy_tpm_0220",
- "GTEXv8 Human Thyroid RNA-Seq (Feb20) TPM log2"
- ],
- [
- "945",
- "GTEXv8_Thy_0220",
- "GTEXv8 Human Thyroid RNA-Seq (Feb20) log2"
- ]
- ],
- "Tibial mRNA": [
- [
- "955",
- "GTEXv8_ArtTib_tpm_0220",
- "GTEXv8 Human Artery Tibial RNA-Seq (Feb20) TPM log2"
- ],
- [
- "906",
- "GTEXv8_ArtTib_0220",
- "GTEXv8 Human Artery Tibial RNA-Seq (Feb20) log2"
- ]
- ],
- "Uterus mRNA": [
- [
- "995",
- "GTEXv8_Ut_tpm_0220",
- "GTEXv8 Human Uterus RNA-Seq (Feb20) TPM log2"
- ],
- [
- "946",
- "GTEXv8_Ut_0220",
- "GTEXv8 Human Uterus RNA-Seq (Feb20) log2"
- ]
- ],
- "Vagina mRNA": [
- [
- "996",
- "GTEXv8_Vag_tpm_0220",
- "GTEXv8 Human Vagina RNA-Seq (Feb20) TPM log2"
- ],
- [
- "947",
- "GTEXv8_Vag_0220",
- "GTEXv8 Human Vagina RNA-Seq (Feb20) log2"
- ]
- ],
- "Whole Blood mRNA": [
- [
- "998",
- "GTEXv8_Wbl_tpm_0220",
- "GTEXv8 Human Whole Blood RNA-Seq (Feb20) TPM log2"
- ],
- [
- "949",
- "GTEXv8_Wbl_0220",
- "GTEXv8 Human Whole Blood RNA-Seq (Feb20) log2"
- ]
- ]
- },
- "HB": {
- "Cerebellum mRNA": [
- [
- "326",
- "HBTRC-MLC_0611",
- "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio"
- ],
- [
- "361",
- "HBTRC-MLC_N_0611",
- "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio"
- ],
- [
- "362",
- "HBTRC-MLC_AD_0611",
- "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio"
- ],
- [
- "363",
- "HBTRC-MLC_HD_0611",
- "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio"
- ]
- ],
- "Prefrontal Cortex mRNA": [
- [
- "328",
- "HBTRC-MLPFC_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
- ],
- [
- "367",
- "HBTRC-MLPFC_N_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "368",
- "HBTRC-MLPFC_AD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "369",
- "HBTRC-MLPFC_HD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
- ]
- ],
- "Primary Visual Cortex mRNA": [
- [
- "327",
- "HBTRC-MLVC_0611",
- "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio"
- ],
- [
- "364",
- "HBTRC-MLVC_N_0611",
- "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "365",
- "HBTRC-MLVC_AD_0611",
- "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "366",
- "HBTRC-MLVC_HD_0611",
- "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio"
- ]
- ]
- },
- "HCP": {
- "Phenotypes": [
- [
- "None",
- "HCPPublish",
- "HCP Private Phenotypes"
- ]
- ]
- },
- "HLC": {
- "Liver mRNA": [
- [
- "320",
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "384",
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
- ],
- [
- "383",
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ]
- ],
- "Phenotypes": [
- [
- "635",
- "HLCPublish",
- "HLC Published Phenotypes"
- ]
- ]
- },
- "HLT": {
- "Lung mRNA": [
- [
- "455",
- "GSE23546HLT0613",
- "Super Series GSE23546 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA"
- ],
- [
- "454",
- "GRNG-GSE23545HLT0613",
- "GRNG/GSE23545 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA"
- ]
- ]
- },
- "HSB": {
- "Amygdala mRNA": [
- [
- "330",
- "KIN_YSM_AMY_0711",
- "GN330 Human Amygdala Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Cerebellar Cortex mRNA": [
- [
- "331",
- "KIN_YSM_CBC_0711",
- "Human Cerebellar Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Dorsolateral Prefrontal Cortex mRNA": [
- [
- "333",
- "KIN_YSM_DFC_0711",
- "Human Dorsolateral Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Hippocampus mRNA": [
- [
- "337",
- "KIN_YSM_HIP_0711",
- "Human Hippocampus Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Inferior Temporal Cortex mRNA": [
- [
- "339",
- "KIN_YSM_ITC_0711",
- "Human Inferior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Medial Prefrontal Cortex mRNA": [
- [
- "343",
- "KIN_YSM_MFC_0711",
- "Human Medial Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Mediodorsal Nucleus of Thalamus mRNA": [
- [
- "342",
- "KIN_YSM_MD_0711",
- "Human Mediodorsal Nucleus of Thalamus Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Orbital Prefrontal Cortex mRNA": [
- [
- "347",
- "KIN_YSM_OFC_0711",
- "Human Orbital Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "HSBPublish",
- "HSB Published Phenotypes"
- ]
- ],
- "Posterior Inferior Parietal Cortex mRNA": [
- [
- "338",
- "KIN_YSM_IPC_0711",
- "Human Posterior Inferior Parietal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Posterior Superior Temporal Cortex mRNA": [
- [
- "350",
- "KIN_YSM_STC_0711",
- "Human Posterior Superior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Primary Auditory (A1) Cortex mRNA": [
- [
- "329",
- "KIN_YSM_A1C_0711",
- "Human Primary Auditory (A1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Primary Motor (M1) Cortex mRNA": [
- [
- "341",
- "KIN_YSM_M1C_0711",
- "Human Primary Motor (M1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Primary Somatosensory (S1) Cortex mRNA": [
- [
- "349",
- "KIN_YSM_S1C_0711",
- "Human Primary Somatosensory (S1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Primary Visual Cortex mRNA": [
- [
- "354",
- "KIN_YSM_V1C_0711",
- "Human Primary Visual Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Striatum mRNA": [
- [
- "351",
- "KIN_YSM_STR_0711",
- "Human Striatum Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ],
- "Ventrolateral Prefrontal Cortex mRNA": [
- [
- "356",
- "KIN_YSM_VFC_0711",
- "Human Ventrolateral Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
- ]
- ]
- },
- "Islets-Gerling": {
- "Islets mRNA": [
- [
- "824",
- "UTHSC_HuIslets_Mar17",
- "UTHSC Human Islets Affy Human Gene 2.0 ST (Mar17) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "Islets-GerlingPublish",
- "Islets-Gerling Phenotypes"
- ]
- ]
- },
- "TIGEM-Retina-RNA-Seq": {
- "Phenotypes": [
- [
- "None",
- "TIGEM-Retina-RNA-SeqPublish",
- "TIGEM-Retina-RNA-Seq Phenotypes"
- ]
- ],
- "Retina mRNA": [
- [
- "802",
- "TIGEM_hg38_ret_rna-seq_0916",
- "TIGEM Human Retina RNA-Seq (Sep16) RPKM log2"
- ]
- ]
- }
- },
- "macaque monkey": {
- "Macaca-fasicularis": {
- "Amygdala mRNA": [
- [
- "255",
- "INIA_MacFas_AMG_RMA_0110",
- "INIA Macaca fasicularis Amygdala (Jan10) RMA"
- ]
- ],
- "Brain mRNA": [
- [
- "251",
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA"
- ]
- ],
- "Hippocampus mRNA": [
- [
- "254",
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus (Jan10) RMA"
- ]
- ],
- "Nucleus Accumbens mRNA": [
- [
- "253",
- "INIA_MacFas_Ac_RMA_0110",
- "INIA Macaca fasicularis Nucleus Accumbens (Jan10) RMA"
- ]
- ],
- "Prefrontal Cortex mRNA": [
- [
- "252",
- "INIA_MacFas_Pf_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex (Jan10) RMA"
- ]
- ]
- }
- },
- "mouse": {
- "AKXD": {
- "Genotypes": [
- [
- "611",
- "AKXDGeno",
- "AKXD Genotypes"
- ]
- ],
- "Mammary Tumors mRNA": [
- [
- "224",
- "NCI_Agil_Mam_Tum_RMA_0409",
- "NCI Mammary LMT miRNA v2 (Apr09) RMA"
- ],
- [
- "36",
- "MA_M_0704_M",
- "NCI Mammary mRNA M430 (July04) MAS5"
- ],
- [
- "37",
- "MA_M_0704_R",
- "NCI Mammary mRNA M430 (July04) RMA"
- ]
- ]
- },
- "AXBXA": {
- "Bone Femur mRNA": [
- [
- "411",
- "UCLA_AXB/BXA_Femur_0113_RSN",
- "UCLA GSE27483 AXB/BXA Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN"
- ]
- ],
- "Eye mRNA": [
- [
- "210",
- "Eye_AXBXA_1008_RankInv",
- "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
- ]
- ],
- "Genotypes": [
- [
- "636",
- "AXBXAGeno",
- "AXBXA Genotypes"
- ]
- ],
- "Heart mRNA": [
- [
- "820",
- "UCLA_AXB_BXA_Aor_Jan16",
- "UCLA AXB/BXA Aorta Affy M430 2.0 (Jan16) RMA"
- ],
- [
- "421",
- "IRCM_AXBXA_HRI0213",
- "IRCM AXB/BXA Mouse Heart ILM MouseRef-8 v2.0 (Feb13) RankInv"
- ]
- ],
- "Liver mRNA": [
- [
- "822",
- "UCLA_AXB_BXA_Liv_Jan16",
- "UCLA AXB/BXA Liver Affy M430 2.0 (Jan16) RMA"
- ],
- [
- "352",
- "GSE16780AB_UCLA_ML0911",
- "GSE16780 UCLA Mouse AXB/BXA Liver Affy HT M430A (Sep11) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "629",
- "AXBXAPublish",
- "AXB/BXA Published Phenotypes"
- ]
- ]
- },
- "B6-Lens": {
- "Ocular Lens mRNA": [
- [
- "999",
- "MouseB6Lens_rma_0220",
- "Mouse Ocular Lens Developmental Timecourse (Feb20) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "B6-LensPublish",
- "B6-Lens Phenotypes"
- ]
- ]
- },
- "B6BTBRF2": {
- "Genotypes": [
- [
- "618",
- "B6BTBRF2Geno",
- "B6BTBRF2 Genotypes"
- ]
- ],
- "Liver mRNA": [
- [
- "38",
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "39",
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "603",
- "B6BTBRF2Publish",
- "B6BTBRF2 Published Phenotypes"
- ]
- ]
- },
- "B6D2": {
- "Phenotypes": [
- [
- "None",
- "B6D2Publish",
- "UTHSC-Glaucoma-Aged-Retina Phenotypes"
- ]
- ],
- "Retina mRNA": [
- [
- "803",
- "UTHSC_mm9_B6D2_Ret_0916",
- "UTHSC B6D2 Retina Affy MoGene 1.0ST (Sep16) Gene Level RMA"
- ],
- [
- "804",
- "UTHSC_mm9_B6D2_RetEx_0916",
- "UTHSC B6D2 Retina Affy MoGene 1.0ST (Sep16) Exon Level RMA"
- ]
- ],
- "Retina microRNA": [
- [
- "806",
- "UTHSC_mm10_B6D2_Ret_miRNA_1116",
- "UTHSC B6D2 Retina Affy miRNA-4.0 (Nov16) RMA"
- ]
- ]
- },
- "B6D2F2": {
- "Brain mRNA": [
- [
- "78",
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "77",
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "76",
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "33",
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "31",
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
- [
- "32",
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ]
- ],
- "Genotypes": [
- [
- "637",
- "B6D2F2Geno",
- "B6D2F2 Genotypes"
- ]
- ]
- },
- "B6D2F2-PSU": {
- "Genotypes": [
- [
- "617",
- "B6D2F2-PSUGeno",
- "B6D2F2-PSU Genotypes"
- ]
- ],
- "Muscle mRNA": [
- [
- "134",
- "PSU-B6D2F2_0812",
- "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA"
- ],
- [
- "404",
- "PSU-B6D2F2_F0812",
- "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Females"
- ],
- [
- "405",
- "PSU-B6D2F2_M0812",
- "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Males"
- ],
- [
- "406",
- "PSU-B6D2F2_M2000812",
- "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Males Aged 200*"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "B6D2F2-PSUPublish",
- "B6D2F2 PSU Phenotypes"
- ]
- ]
- },
- "B6D2RI": {
- "Hippocampus mRNA": [
- [
- "712",
- "UTHSC_BXDAged_0615",
- "UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Jun15) RMA"
- ],
- [
- "805",
- "UTHSC_BXDAgedEx_1116",
- "UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Jun15) Exon Level RMA"
- ],
- [
- "391",
- "UTHSC_B6D2RI_H_0912",
- "UTHSC B6D2RI Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "651",
- "B6D2RIPublish",
- "B6D2RI Phenotypes"
- ]
- ]
- },
- "BDF2-1999": {
- "Genotypes": [
- [
- "None",
- "BDF2-1999Geno",
- "BDF2-1999 Genotypes"
- ]
- ],
- "Liver mRNA": [
- [
- "169",
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ]
- ]
- },
- "BDF2-2005": {
- "Genotypes": [
- [
- "None",
- "BDF2-2005Geno",
- "BDF2-2005 Genotypes"
- ]
- ],
- "Striatum mRNA": [
- [
- "83",
- "SA_M2_0905_M",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
- ],
- [
- "85",
- "SA_M2_0905_P",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
- ],
- [
- "84",
- "SA_M2_0905_R",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
- ]
- ]
- },
- "BHF2": {
- "Adipose mRNA": [
- [
- "197",
- "UCLA_BHF2_ADIPOSE_FEMALE",
- "UCLA BHF2 Adipose Female mlratio"
- ],
- [
- "196",
- "UCLA_BHF2_ADIPOSE_MALE",
- "UCLA BHF2 Adipose Male mlratio"
- ],
- [
- "165",
- "UCLA_BHF2_ADIPOSE_0605",
- "UCLA BHF2 Adipose (June05) mlratio"
- ]
- ],
- "Brain mRNA": [
- [
- "199",
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "198",
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "166",
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ]
- ],
- "Genotypes": [
- [
- "None",
- "BHF2Geno",
- "BHF2 Genotypes"
- ]
- ],
- "Liver mRNA": [
- [
- "201",
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "200",
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "167",
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ]
- ],
- "Muscle mRNA": [
- [
- "203",
- "UCLA_BHF2_MUSCLE_FEMALE",
- "UCLA BHF2 Muscle Female mlratio*"
- ],
- [
- "202",
- "UCLA_BHF2_MUSCLE_MALE",
- "UCLA BHF2 Muscle Male mlratio*"
- ],
- [
- "168",
- "UCLA_BHF2_MUSCLE_0605",
- "UCLA BHF2 Muscle (June05) mlratio*"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "BHF2Publish",
- "BHF2 Phenotypes"
- ]
- ]
- },
- "BHHBF2": {
- "Adipose mRNA": [
- [
- "174",
- "UCLA_BHHBF2_ADIPOSE_2005",
- "UCLA BHHBF2 Adipose (2005) mlratio"
- ],
- [
- "180",
- "UCLA_BHHBF2_ADIPOSE_MALE",
- "UCLA BHHBF2 Adipose Male Only"
- ],
- [
- "181",
- "UCLA_BHHBF2_ADIPOSE_FEMALE",
- "UCLA BHHBF2 Adipose Female Only"
- ]
- ],
- "Brain mRNA": [
- [
- "175",
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio"
- ],
- [
- "182",
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "183",
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ]
- ],
- "Genotypes": [
- [
- "None",
- "BHHBF2Geno",
- "BHHBF2 Genotypes"
- ]
- ],
- "Liver mRNA": [
- [
- "176",
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio"
- ],
- [
- "184",
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "185",
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ]
- ],
- "Muscle mRNA": [
- [
- "177",
- "UCLA_BHHBF2_MUSCLE_2005",
- "UCLA BHHBF2 Muscle (2005) mlratio"
- ],
- [
- "186",
- "UCLA_BHHBF2_MUSCLE_MALE",
- "UCLA BHHBF2 Muscle Male Only"
- ],
- [
- "187",
- "UCLA_BHHBF2_MUSCLE_FEMALE",
- "UCLA BHHBF2 Muscle Female Only"
- ]
- ]
- },
- "BXD": {
- "Adipose Proteome": [
- [
- "797",
- "EPFL_AdiPro0416",
- "EPFL/ETHZ BXD Brown Adipose, Total Tissue Proteome, Chow Diet (Apr16) Light SWATH"
- ],
- [
- "798",
- "EPFL_AdiMitPro0416",
- "EPFL/ETHZ BXD Brown Adipose, Isolated Mitochondria Proteome, Chow Diet (Apr16) Light SWATH"
- ]
- ],
- "Adipose mRNA": [
- [
- "469",
- "EPFLADGL1013",
- "EPFL/LISP BXD CD Brown Adipose Affy Mouse Gene 2.0 ST Gene Level (Oct13) RMA"
- ],
- [
- "470",
- "EPFLADEL1013",
- "EPFL/LISP BXD CD Brown Adipose Affy Mouse Gene 2.0 ST Exon Level (Oct13) RMA"
- ],
- [
- "777",
- "EL_BXDCDHFDScWAT_0216",
- "EPFL/LISP BXD CD+HFD Subcutaneous WAT Affy MTA 1.0 Gene Level (Feb16) RMA"
- ],
- [
- "778",
- "EL_BXDHFDScWAT_0216",
- "EPFL/LISP BXD HFD Subcutaneous WAT Affy MTA 1.0 Gene Level (Feb16) RMA"
- ],
- [
- "779",
- "EL_BXDCDScWAT_0216",
- "EPFL/LISP BXD CD Subcutaneous WAT Affy MTA 1.0 Gene Level (Feb16) RMA"
- ]
- ],
- "Adrenal Gland mRNA": [
- [
- "388",
- "INIA_Adrenal_RMA_0612",
- "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA"
- ],
- [
- "426",
- "INIA_Adrenal_RMA_F_0612",
- "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Females"
- ],
- [
- "425",
- "INIA_Adrenal_RMA_M_0612",
- "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Males"
- ],
- [
- "334",
- "INIA_Adrenal_RMA_Ex_0612",
- "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Exon Level"
- ]
- ],
- "Amygdala mRNA": [
- [
- "323",
- "INIA_AmgCoh_0311",
- "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
- ],
- [
- "280",
- "INIA_Amg_BLA_RMA_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
- ],
- [
- "316",
- "INIA_Amg_BLA_RMA_M_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
- ],
- [
- "315",
- "INIA_Amg_BLA_RMA_F_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
- ],
- [
- "158",
- "INIA_Amg_BLA_Ex-RMA_1110",
- "INIA Amygdala Exon Affy MoGene 1.0 ST (Nov10) RMA"
- ]
- ],
- "Bone Femur mRNA": [
- [
- "410",
- "UCLA_BXD_Femur_0113_RSN",
- "UCLA GSE27483 BXD Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN"
- ],
- [
- "414",
- "UCLA_BXD-on_Femur_0113_RSN",
- "UCLA GSE27483 BXD Only Bone Femur ILM Mouse WG-6 v1.1 (Jan13) RSN"
- ],
- [
- "464",
- "UTHSCWGU88BFMG1013",
- "UTHSC WGU88 Male Bone Femur AFFY Mouse Gene ST 2.0 Gene Level (Oct13) RMA"
- ],
- [
- "465",
- "UTHSCWGU88BFMEx1013",
- "UTHSC WGU88 Male Bone Femur AFFY Mouse Gene ST 2.0 Exon Level (Oct13) RMA"
- ],
- [
- "466",
- "UTHSCWGU88BFFG1013",
- "UTHSC WGU88 Female Bone Femur AFFY Mouse Gene ST 2.0 Gene Level (Oct13) RMA"
- ],
- [
- "467",
- "UTHSCWGU88BFFEx1013",
- "UTHSC WGU88 Female Bone Femur AFFY Mouse Gene ST 2.0 Exon Level (Oct13) RMA"
- ]
- ],
- "Brain mRNA": [
- [
- "164",
- "UTHSC_BXD_WB_RNASeq1112",
- "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Untrimmed"
- ],
- [
- "590",
- "UTHSC_BXD_WB_RNASeqtrim1_1112",
- "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Trimmed 1.0"
- ],
- [
- "394",
- "UTHSC_BXD_WB_RNASeqEx1112",
- "UTHSC Mouse BXD Whole Brain RNA Sequence Exon Level (Nov12) RPKM"
- ],
- [
- "123",
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "113",
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "101",
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "102",
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
- "95",
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "81",
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "80",
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "82",
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "42",
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
- ]
- ],
- "Cartilage mRNA": [
- [
- "208",
- "UCLA_BXDBXH_CARTILAGE_V2",
- "UCLA BXD and BXH Cartilage v2"
- ],
- [
- "204",
- "UCLA_BXDBXH_CARTILAGE",
- "UCLA BXD and BXH Cartilage"
- ],
- [
- "178",
- "UCLA_BXD_CARTILAGE",
- "UCLA BXD Cartilage"
- ]
- ],
- "Cerebellum mRNA": [
- [
- "72",
- "GCB_M2_0505_R",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA"
- ],
- [
- "73",
- "GCB_M2_0505_P",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN"
- ],
- [
- "71",
- "GCB_M2_0505_M",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5"
- ],
- [
- "56",
- "CB_M_0305_R",
- "SJUT Cerebellum mRNA M430 (Mar05) RMA"
- ],
- [
- "55",
- "CB_M_0305_P",
- "SJUT Cerebellum mRNA M430 (Mar05) PDNN"
- ],
- [
- "54",
- "CB_M_0305_M",
- "SJUT Cerebellum mRNA M430 (Mar05) MAS5"
- ],
- [
- "46",
- "CB_M_1004_R",
- "SJUT Cerebellum mRNA M430 (Oct04) RMA"
- ],
- [
- "45",
- "CB_M_1004_P",
- "SJUT Cerebellum mRNA M430 (Oct04) PDNN"
- ],
- [
- "44",
- "CB_M_1004_M",
- "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
- ],
- [
- "9",
- "CB_M_1003_M",
- "SJUT Cerebellum mRNA M430 (Oct03) MAS5"
- ],
- [
- "436",
- "CMMTUBCBXDCerILM0513",
- "UBC/CMMT BXD Cerebellum All Ages Combined ILM Mouse WG-6 v2.0 (May13) RankInv"
- ],
- [
- "441",
- "CMMTUBCBXDG12CerILM0513",
- "UBC/CMMT BXD E12 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv"
- ],
- [
- "442",
- "CMMTUBCBXDG15CerILM0513",
- "UBC/CMMT BXD E15 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv"
- ],
- [
- "443",
- "CMMTUBCBXDG18CerILM0513",
- "UBC/CMMT BXD E18 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv"
- ],
- [
- "437",
- "CMMTUBCBXDP00CerILM0513",
- "UBC/CMMT BXD P0 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv"
- ],
- [
- "438",
- "CMMTUBCBXDP03CerILM0513",
- "UBC/CMMT BXD P3 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv"
- ],
- [
- "439",
- "CMMTUBCBXDP06CerILM0513",
- "UBC/CMMT BXD P6 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv"
- ],
- [
- "440",
- "CMMTUBCBXDP09CerILM0513",
- "UBC/CMMT BXD P9 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv"
- ],
- [
- "415",
- "GenEx_BXD_CerebEt_RMA_0213",
- "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Both Sexes"
- ],
- [
- "416",
- "GenEx_BXD_CerebEt_RMA_F_0213",
- "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Females"
- ],
- [
- "417",
- "GenEx_BXD_CerebEt_RMA_M_0213",
- "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Males"
- ],
- [
- "418",
- "GenEx_BXD_CerebSal_RMA_0213",
- "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Both Sexes"
- ],
- [
- "419",
- "GenEx_BXD_CerebSal_RMA_F_0213",
- "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Females"
- ],
- [
- "420",
- "GenEx_BXD_CerebSal_RMA_M_0213",
- "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Males"
- ]
- ],
- "Eye mRNA": [
- [
- "207",
- "Eye_M2_0908_R",
- "Eye M430v2 (Sep08) RMA"
- ],
- [
- "10",
- "gn10",
- "Eye M430v2 No Mutant/Mutant (Aug12) RMA"
- ],
- [
- "261",
- "Eye_M2_0908_R_NB",
- "Eye M430v2 Mutant Gpnmb (Sep08) RMA"
- ],
- [
- "262",
- "Eye_M2_0908_R_ND",
- "Eye M430v2 WT Gpnmb (Sep08) RMA"
- ],
- [
- "382",
- "Eye_M2_0908_WTWT",
- "Eye M430v2 WT WT (Sep08) RMA"
- ],
- [
- "279",
- "Eye_M2_0908_R_WT",
- "Eye M430v2 WT Tyrp1 (Sep08) RMA"
- ],
- [
- "278",
- "Eye_M2_0908_R_MT",
- "Eye M430v2 Mutant Tyrp1 (Sep08) RMA"
- ],
- [
- "400",
- "DBA2J-ONH-1212",
- "Howell et al. 2011, DBA/2J Glaucoma Optic Nerve Head M430 2.0 (Dec12) RMA"
- ],
- [
- "360",
- "BXD_GLA_0911",
- "Howell et al. 2011, DBA/2J Glaucoma Retina M430 2.0 (Sep11) RMA"
- ]
- ],
- "Fecal Metabolome": [
- [
- "717",
- "RTI_RCMRC-BXDFecMetlog0814",
- "RTI RCMRC BXD Fecal Metabolites CD+HFD (Aug14) Log2"
- ],
- [
- "716",
- "RTI_RCMRC-BXDFecMetHFlog0814",
- "RTI RCMRC BXD Fecal Metabolites HFD (Aug14) Log2"
- ],
- [
- "715",
- "RTI_RCMRC-BXDFecMetLFlog0814",
- "RTI RCMRC BXD Fecal Metabolites CD (Aug14) Log2"
- ]
- ],
- "Gastrointestinal mRNA": [
- [
- "539",
- "UTHSC_GutGL_0414",
- "UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Gene Level (Apr14) RMA"
- ],
- [
- "597",
- "UTHSC_GutExL_0414",
- "UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Exon Level (Apr14) RMA"
- ],
- [
- "839",
- "EPFL-LISP_BXD_Col-CD+HFD0917",
- "EPFL/LISP BXD CD+HFD Gastrointestinal Affy Clariom S GeneLevel Main (Sep17) RMA"
- ],
- [
- "841",
- "EPFL-LISP_BXD_Col-HFD0917",
- "EPFL/LISP BXD HFD Gastrointestinal Affy Clariom S GeneLevel Main (Sep17) RMA"
- ],
- [
- "840",
- "EPFL-LISP_BXD_Col-CD0917",
- "EPFL/LISP BXD CD Gastrointestinal Affy Clariom S GeneLevel Main (Sep17) RMA"
- ]
- ],
- "Genotypes": [
- [
- "600",
- "BXDGeno",
- "BXD Genotypes"
- ]
- ],
- "Heart mRNA": [
- [
- "819",
- "UCLA_BXD_Aor_Jan16",
- "UCLA BXD Aorta Affy M430 2.0 (Jan16) RMA"
- ],
- [
- "485",
- "EPFL-LISPBXDHeCD0114",
- "EPFL/LISP BXD CD Heart Affy Mouse Gene 2.0 ST Gene Level (Jan14) RMA"
- ],
- [
- "486",
- "EPFL-LISPBXDHeHFD0114",
- "EPFL/LISP BXD HFD Heart Affy Mouse Gene 2.0 ST Gene Level (Jan14) RMA"
- ],
- [
- "487",
- "EPFL-LISPBXDHeCDEx0114",
- "EPFL/LISP BXD CD Heart Affy Mouse Gene 2.0 ST Exon Level (Jan14) RMA"
- ],
- [
- "488",
- "EPFL-LISPBXDHeHFDEx0114",
- "EPFL/LISP BXD HFD Heart Affy Mouse Gene 2.0 ST Exon Level (Jan14) RMA"
- ]
- ],
- "Hematopoietic Cells mRNA": [
- [
- "149",
- "UMCG_0907_HemaStem_ori",
- "UMCG Stem Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "145",
- "UMCG_0907_HemaStem",
- "UMCG Stem Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "151",
- "UMCG_0907_Pro_ori",
- "UMCG Progenitor Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "147",
- "UMCG_0907_Pro",
- "UMCG Progenitor Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "150",
- "UMCG_0907_Eryth_ori",
- "UMCG Erythroid Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "146",
- "UMCG_0907_Eryth",
- "UMCG Erythroid Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "148",
- "UMCG_0907_Myeloid_ori",
- "UMCG Myeloid Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "144",
- "UMCG_0907_Myeloid",
- "UMCG Myeloid Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "7",
- "HC_U_0304_R",
- "GNF Stem Cells U74Av2 (Mar04) RMA"
- ]
- ],
- "Hippocampal Precursor Cells mRNA": [
- [
- "706",
- "CRTD_HipPreCell1214",
- "CRTD BXD Hippocampal Precursor Cells ILM MouseWG-6_R13 (Dec14) Quantile"
- ]
- ],
- "Hippocampus mRNA": [
- [
- "112",
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "111",
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "110",
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
- "206",
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "814",
- "UTHSC_ILM_BXD_hipp_NOSb_0217",
- "UTHSC BXD Hippocampus ILM v6.1 NOS Balanced (Feb17) RankInv"
- ],
- [
- "815",
- "UTHSC_ILM_BXD_hipp_NOEb_0217",
- "UTHSC BXD Hippocampus ILM v6.1 NOE Balanced (Feb17) RankInv"
- ],
- [
- "816",
- "UTHSC_ILM_BXD_hipp_RSSb_0217",
- "UTHSC BXD Hippocampus ILM v6.1 RSS Balanced (Feb17) RankInv"
- ],
- [
- "817",
- "UTHSC_ILM_BXD_hipp_RSEb_0217",
- "UTHSC BXD Hippocampus ILM v6.1 RSE Balanced (Feb17) RankInv"
- ],
- [
- "780",
- "UTHSC_ILM_BXD_hipp_NOEb_0216",
- "UTHSC BXD Hippocampus ILM v6.1 NOE Balanced (Feb16) RankInv"
- ],
- [
- "781",
- "UTHSC_ILM_BXD_hipp_RSEb_0216",
- "UTHSC BXD Hippocampus ILM v6.1 RSE Balanced (Feb16) RankInv"
- ],
- [
- "782",
- "UTHSC_ILM_BXD_hipp_RSSb_0216",
- "UTHSC BXD Hippocampus ILM v6.1 RSS Balanced (Feb16) RankInv"
- ],
- [
- "291",
- "UT_ILM_BXD_hipp_5T_1112",
- "UTHSC Hippocampus Illumina v6.1 All Combined (Nov12) RankInv"
- ],
- [
- "292",
- "UT_ILM_BXD_hipp_NON_1112",
- "UTHSC Hippocampus Illumina v6.1 NON (Nov12) RankInv"
- ],
- [
- "293",
- "UT_ILM_BXD_hipp_NOS_1112",
- "UTHSC Hippocampus Illumina v6.1 NOS (Nov12) RankInv"
- ],
- [
- "294",
- "UT_ILM_BXD_hipp_NOE_1112",
- "UTHSC Hippocampus Illumina v6.1 NOE (Nov12) RankInv"
- ],
- [
- "295",
- "UT_ILM_BXD_hipp_RSS_1112",
- "UTHSC Hippocampus Illumina v6.1 RSS (Nov12) RankInv"
- ],
- [
- "296",
- "UT_ILM_BXD_hipp_RSE_1112",
- "UTHSC Hippocampus Illumina v6.1 RSE (Nov12) RankInv"
- ],
- [
- "242",
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "243",
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
- ],
- [
- "246",
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
- ],
- [
- "244",
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
- ],
- [
- "245",
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ],
- [
- "711",
- "UTHSC_BXD_AgeHipp0515",
- "UTHSC BXD Aged Hippocampus Affy MoGene1.0 ST (May15) RMA Gene Level"
- ],
- [
- "393",
- "UTHSC_BXD_HArev3_0912",
- "UTHSC BXD Aged Hippocampus rev3 Affy Mouse Gene 1.0 ST (Sep12) RMA"
- ],
- [
- "392",
- "UTHSC_BXD_H_0912",
- "UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA Exon Level"
- ]
- ],
- "Hippocampus microRNA": [
- [
- "491",
- "UTHSC_BXD_Hip_miRNASeq0214",
- "UTHSC BXD Hippocampus Ion Torrent microRNA (Feb14) RPKM*"
- ]
- ],
- "Hypothalamus mRNA": [
- [
- "281",
- "INIA_Hyp_RMA_1110",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)"
- ],
- [
- "318",
- "INIA_Hyp_M_RMA_1110",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male"
- ],
- [
- "317",
- "INIA_Hyp_F_RMA_1110",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female"
- ],
- [
- "459",
- "INIA_Hyp_PCA_0813_v4",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080913"
- ],
- [
- "458",
- "INIA_Hyp_PCA_0813_v3",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080813"
- ],
- [
- "457",
- "INIA_Hyp_PCA_0813_v2",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080513"
- ],
- [
- "456",
- "INIA_Hyp_PCA_0813",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080213"
- ],
- [
- "159",
- "INIA_Hyp_RMA_Ex-1110",
- "INIA Hypothalamus Exon Affy MoGene 1.0 ST (Nov10)"
- ]
- ],
- "Kidney mRNA": [
- [
- "240",
- "MA_M2M_0706_R",
- "Mouse kidney M430v2 Male (Aug06) RMA"
- ],
- [
- "239",
- "MA_M2F_0706_R",
- "Mouse kidney M430v2 Female (Aug06) RMA"
- ],
- [
- "118",
- "MA_M2_0806_R",
- "Mouse kidney M430v2 Sex Balanced (Aug06) RMA"
- ],
- [
- "117",
- "MA_M2_0806_P",
- "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN"
- ],
- [
- "115",
- "MA_M2_0706_R",
- "Mouse Kidney M430v2 (Jul06) RMA"
- ],
- [
- "116",
- "MA_M2_0706_P",
- "Mouse Kidney M430v2 (Jul06) PDNN"
- ]
- ],
- "Leucocytes mRNA": [
- [
- "218",
- "Illum_BXD_PBL_1108",
- "UWA Illumina PBL (Nov08) RSN*"
- ]
- ],
- "Liver DNAm": [
- [
- "891",
- "UTHSC-BXD-LivDNAm-1119",
- "UTHSC BXD Liver CD-HFD DNAm (Nov19) Sesame"
- ],
- [
- "892",
- "UTHSC-BXD-LivHFDNAm-1119",
- "UTHSC BXD Liver HFD DNAm (Nov19) Sesame"
- ],
- [
- "893",
- "UTHSC-BXD-LivCDNAm-1119",
- "UTHSC BXD Liver CD DNAm (Nov19) Sesame"
- ]
- ],
- "Liver Metabolome": [
- [
- "835",
- "UTHSC-ETHZ-EPFL_LivPMetExtACD0817",
- "UTHSC/ETHZ/EPFL BXD Liver Polar Metabolites Extraction, Chow Diet Cohorts (Jul 2017) log2"
- ],
- [
- "836",
- "UTHSC-ETHZ-EPFL_LivPMetExtAHFD0817",
- "UTHSC/ETHZ/EPFL BXD Liver Polar Metabolites Extraction, HFD Cohorts (Jul 2017) log2"
- ],
- [
- "473",
- "EPFL-LISP_LivPMetCDHFD1213",
- "EPFL/LISP BXD Liver Polar Metabolites CD+HFD (Jun14)"
- ],
- [
- "474",
- "EPFL-LISP_LivPMetHFD1213",
- "EPFL/LISP BXD Liver Polar Metabolites HFD (Jun14)"
- ],
- [
- "475",
- "EPFL-LISP_LivPMetCD1213",
- "EPFL/LISP BXD Liver Polar Metabolites CD (Jun14)"
- ],
- [
- "713",
- "EPFL-LISP_LivPMetlog2HFD1213",
- "EPFL/LISP BXD Liver Polar Metabolites HFD (Jun14) Log2"
- ],
- [
- "714",
- "EPFL-LISP_LivPMetlog2CD1213",
- "EPFL/LISP BXD Liver Polar Metabolites CD (Jun14) Log2"
- ]
- ],
- "Liver Proteome": [
- [
- "887",
- "EPFL-ETHZ-BXD-LivProtAvg-CD-HF-1119",
- "EPFL/ETHZ BXD Liver Proteome CD+HFD (Nov19)"
- ],
- [
- "888",
- "EPFL-ETHZ-BXD-LivProtAvg-CD-1119",
- "EPFL/ETHZ BXD Liver Proteome CD (Nov19)"
- ],
- [
- "889",
- "EPFL-ETHZ-BXD-LivProtAvg-HFD-1119",
- "EPFL/ETHZ BXD Liver Proteome HFD (Nov19)"
- ],
- [
- "540",
- "EPFLETHZBXDprotCD0514",
- "EPFL/ETHZ BXD Liver, Chow Diet (Jun16) Top100 SWATH"
- ],
- [
- "541",
- "EPFLETHZBXDprotHFD0514",
- "EPFL/ETHZ BXD Liver, High Fat Diet (Jun16) Top100 SWATH"
- ],
- [
- "704",
- "EPFLETHZBXDprotCD_LS1114",
- "EPFL/ETHZ BXD Liver, Chow Diet (Oct14) Top10 SWATH"
- ],
- [
- "705",
- "EPFLETHZBXDprotHF_LS1114",
- "EPFL/ETHZ BXD Liver, High Fat Diet Diet (Oct14) Top10 SWATH"
- ],
- [
- "703",
- "EPFLBXDprotCD-CDHFDRPN0214",
- "EPFL/LISP BXD Liver, Soluble Proteins CD+HFD (Feb14) SRM"
- ],
- [
- "490",
- "EPFLBXDprotCDRPN0214",
- "EPFL/LISP BXD Liver, Soluble Proteins CD (Feb14) SRM"
- ],
- [
- "489",
- "EPFLBXDprotHFDRPN0214",
- "EPFL/LISP BXD Liver, Soluble Proteins HFD (Feb14) SRM"
- ]
- ],
- "Liver mRNA": [
- [
- "857",
- "EPFLMouseLiverCDHFDRMA0818",
- "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Aug18) RMA"
- ],
- [
- "858",
- "EPFLMouseLiverHFDRMA0818",
- "EPFL/LISP BXD HFD Liver Affy Mouse Gene 1.0 ST (Aug18) RMA"
- ],
- [
- "859",
- "EPFLMouseLiverCDRMA0818",
- "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Aug18) RMA"
- ],
- [
- "854",
- "NIA-AgBXD-Liv_CDHFD-rna-seq-0818",
- "NIA Aging BXD CD+HFD Liver RNA-Seq (Aug18) Log2"
- ],
- [
- "855",
- "NIA-AgBXD-Liv_HFD-rna-seq-0818",
- "NIA Aging BXD HFD Liver RNA-Seq (Aug18) Log2"
- ],
- [
- "856",
- "NIA-AgBXD-Liv_CD-rna-seq-0818",
- "NIA Aging BXD CD Liver RNA-Seq (Aug18) Log2"
- ],
- [
- "851",
- "NIA-AgBXD-Liv_CDHFD-0818",
- "NIA Aging BXD CD+HFD Liver Affy Clariom S Gene Level (Aug18) RMA"
- ],
- [
- "852",
- "NIA-AgBXD-Liv_HFD-0818",
- "NIA Aging BXD HFD Liver Affy Clariom S Gene Level (Aug18) RMA"
- ],
- [
- "853",
- "NIA-AgBXD-Liv_CD-0818",
- "NIA Aging BXD CD Liver Affy Clariom S Gene Level (Aug18) RMA"
- ],
- [
- "818",
- "UCLA_BXD_Liv_Jan16",
- "UCLA BXD Liver Affy M430 2.0 (Jan16) RMA"
- ],
- [
- "430",
- "EPFLMouseLiverRMA0413",
- "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA"
- ],
- [
- "431",
- "EPFLMouseLiverHFDRMA0413",
- "EPFL/LISP BXD HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA"
- ],
- [
- "848",
- "EPFLMouseLiverHFCEx0413",
- "EPFL/LISP BXD HFC Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level"
- ],
- [
- "432",
- "EPFLMouseLiverCDRMA0413",
- "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA"
- ],
- [
- "849",
- "EPFLMouseLiverCDEx0413",
- "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level"
- ],
- [
- "433",
- "EPFLMouseLiverBothExRMA0413",
- "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level"
- ],
- [
- "700",
- "UTHSC-VGX_MmBXDHepatocytesRMA1014",
- "UT-VGX Hepatocytes Affy Mouse Gene 1.0 ST Gene Level (Oct14) RMA"
- ],
- [
- "701",
- "UT-VGX_HEL1014",
- "UT-VGX Hepatocytes Affy Mouse Gene 1.0 ST Exon Level (Oct14) RMA"
- ],
- [
- "373",
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "325",
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver CCl4-treated Affy Mouse Gene 1.0 ST (Jun11) RMA"
- ],
- [
- "702",
- "SUH_Liv_RMAEx_0611",
- "SUH BXD Liver CCl4-treated Affy Mouse Gene 1.0 ST Exon Level (Jun11) RMA"
- ],
- [
- "256",
- "GenEx_BXD_liverEt_M5_0912",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Both Sexes"
- ],
- [
- "257",
- "GenEx_BXD_liverEt_M5M_0912",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Males"
- ],
- [
- "258",
- "GenEx_BXD_liverEt_M5F_0912",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Females"
- ],
- [
- "307",
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes"
- ],
- [
- "308",
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males"
- ],
- [
- "309",
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females"
- ],
- [
- "310",
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes"
- ],
- [
- "311",
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males"
- ],
- [
- "312",
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females"
- ]
- ],
- "Lung mRNA": [
- [
- "160",
- "HZI_0408_R",
- "HZI Lung M430v2 (Apr08) RMA"
- ],
- [
- "161",
- "HZI_0408_M",
- "HZI Lung M430v2 (Apr08) MAS5"
- ],
- [
- "807",
- "HZI_LungBXD_RNA-Seq_1116",
- "HZI Lung Flu Infected BXD (Nov16) RNA-Seq*"
- ],
- [
- "598",
- "HZI_PR8M-F_1014",
- "HZI PR8M-Infected Lungs Females RNAseq (Oct14) RPKM Log2*"
- ],
- [
- "387",
- "HZI_PR8M_Q_0612",
- "HZI PR8M-Infected Lungs Agilent4x44 (Apr12) Quantile Females"
- ],
- [
- "424",
- "HZI_LTCF_0313",
- "HZI Lung Time Course Flu PR8M (Mar13) Schughart*"
- ]
- ],
- "Midbrain mRNA": [
- [
- "381",
- "VUBXDMouseMidBrainQ0512",
- "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (May12) Quantile"
- ]
- ],
- "Muscle Metabolome": [
- [
- "476",
- "EPFL-LISP_MusPMetCDHFD1213",
- "EPFL/LISP BXD Muscle Polar Metabolites CD+HFD (Jun14)"
- ],
- [
- "477",
- "EPFL-LISP_MusPMetHFD1213",
- "EPFL/LISP BXD Muscle Polar Metabolites HFD (Jun14)"
- ],
- [
- "478",
- "EPFL-LISP_MusPMetCD1213",
- "EPFL/LISP BXD Muscle Polar Metabolites CD (Jun14)"
- ]
- ],
- "Muscle mRNA": [
- [
- "378",
- "EPFLMouseMuscleRMA1211",
- "EPFL/LISP BXD CD+HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA"
- ],
- [
- "380",
- "EPFLMouseMuscleHFDRMA1211",
- "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA"
- ],
- [
- "379",
- "EPFLMouseMuscleCDRMA1211",
- "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA"
- ],
- [
- "395",
- "EPFLMouseMuscleRMA_Ex1112",
- "EPFL/LISP BXD CD+HFD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level"
- ],
- [
- "396",
- "EPFLMouseMuscleHFDRMAEx1112",
- "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level"
- ],
- [
- "397",
- "EPFLMouseMuscleCDRMAEx1112",
- "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level"
- ]
- ],
- "Neocortex mRNA": [
- [
- "374",
- "DevNeocortex_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv"
- ],
- [
- "375",
- "DevNeocortex_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv"
- ],
- [
- "284",
- "HQFNeoc_1210v2_RankInv",
- "HQF BXD Neocortex ILM6v1.1 (Dec10v2) RankInv"
- ],
- [
- "282",
- "HQFNeoc_1210_RankInv",
- "HQF BXD Neocortex ILM6v1.1 (Dec10) RankInv"
- ],
- [
- "157",
- "HQFNeoc_0208_RankInv",
- "HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv"
- ],
- [
- "275",
- "DevNeocortex_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv"
- ],
- [
- "274",
- "DevNeocortex_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv"
- ]
- ],
- "Neutrophils mRNA": [
- [
- "595",
- "UTHSC-Neut-1014",
- "UTHSC Elicited Peritoneal Neutrophils Affy MoGene 2.0 ST (Oct14) RMA"
- ],
- [
- "596",
- "UTHSC-Neut_EL-1014",
- "UTHSC Elicited Peritoneal Neutrophils Affy MoGene 2.0 ST (Oct14) RMA Exon Level"
- ]
- ],
- "Nucleus Accumbens mRNA": [
- [
- "156",
- "VCUSalo_1007_R",
- "VCU BXD NAc Sal M430 2.0 (Oct07) RMA"
- ],
- [
- "792",
- "VCU_BXD_Nac_CIE_Air_0416",
- "VCU BXD NAc CIE Air Masked ComBat M430 2.0 (Apr16) RMA"
- ],
- [
- "793",
- "VCU_BXD_Nac_CIE_AirZ_0416",
- "VCU BXD NAc CIE Air Masked ComBat M430 2.0 (Apr16) RMA Z-score"
- ],
- [
- "794",
- "VCU_BXD_Nac_CIE_Et_0416",
- "VCU BXD NAc CIE EtOH Masked ComBat M430 2.0 (Apr16) RMA"
- ],
- [
- "795",
- "VCU_BXD_Nac_CIE_EtZ_0416",
- "VCU BXD NAc CIE EtOH Masked ComBat M430 2.0 (Apr16) RMA Z-score"
- ],
- [
- "155",
- "VCUEtOH_1007_R",
- "VCU BXD NAc EtOH M430 2.0 (Oct07) RMA"
- ],
- [
- "154",
- "VCUSal_1007_R",
- "VCU BXD NAc EtOH vs Sal M430 2.0 (Oct07) Sscore*"
- ],
- [
- "409",
- "VCU_NAc_Air_0113_R",
- "VCU BXD NAc CIE Air M430 2.0 (Jan13) RMA"
- ],
- [
- "408",
- "VCU_NAc_Et_0113_R",
- "VCU BXD NAc CIE EtOH M430 2.0 (Jan13) RMA"
- ],
- [
- "407",
- "VCU_NAc_AvE_0113_Ss",
- "VCU BXD NAc EtOH vs CIE Air M430 2.0 (Jan13) Sscore*"
- ]
- ],
- "Phenotypes": [
- [
- "602",
- "BXDPublish",
- "BXD Published Phenotypes"
- ],
- [
- "658",
- "GITrMetPublish",
- "GI Tract Metagenome Phenotypes"
- ]
- ],
- "Pituitary Gland mRNA": [
- [
- "389",
- "INIA_PG_RMA_0612",
- "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA"
- ],
- [
- "427",
- "INIA_Pituitary_RMA_F_0612",
- "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Females"
- ],
- [
- "428",
- "INIA_Pituitary_RMA_M_0612",
- "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Males"
- ],
- [
- "335",
- "INIA_PG_RMA_Ex_0612",
- "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Exon Level"
- ]
- ],
- "Popliteal Lymph Node mRNA": [
- [
- "390",
- "STJ_PLN_0912",
- "St Jude BXD Popliteal Lymph Node Affy HT MG-430 PM (Sep12) RMA"
- ]
- ],
- "Prefrontal Cortex mRNA": [
- [
- "898",
- "DOD-BXD-PFC-CD-RNA-Seq-ComB-1019",
- "DOD BXD PFC GWI CD RNA-Seq ComB (Dec19) TPM Log2"
- ],
- [
- "899",
- "DOD-BXD-PFC-CTL-RNA-Seq-ComB-1019",
- "DOD BXD PFC GWI CTL RNA-Seq ComB (Dec19) TPM Log2"
- ],
- [
- "900",
- "DOD-BXD-PFC-DFP-RNA-Seq-ComB-1019",
- "DOD BXD PFC GWI DFP RNA-Seq ComB (Dec19) TPM Log2"
- ],
- [
- "883",
- "DOD-BXD-PFC-CD-RNA-Seq-1019",
- "DOD BXD PFC GWI CD RNA-Seq (Oct19) TPM Log2"
- ],
- [
- "884",
- "DOD-BXD-PFC-CTL-RNA-Seq-1019",
- "DOD BXD PFC GWI CTL RNA-Seq (Oct19) TPM Log2"
- ],
- [
- "885",
- "DOD-BXD-PFC-DFP-RNA-Seq-1019",
- "DOD BXD PFC GWI DFP RNA-Seq (Oct19) TPM Log2"
- ],
- [
- "135",
- "VCUSal_1206_R",
- "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
- ],
- [
- "136",
- "VCUEtOH_1206_R",
- "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
- ],
- [
- "137",
- "VCUSal_1006_R",
- "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
- ],
- [
- "788",
- "VCU_BXD_PFC_CIE_Air_0416",
- "VCU BXD PFC CIE Air Masked ComBat M430 2.0 (Apr16) RMA"
- ],
- [
- "789",
- "VCU_BXD_PFC_CIE_AirZ_0416",
- "VCU BXD PFC CIE Air Masked ComBat M430 2.0 (Apr16) RMA Z-score"
- ],
- [
- "790",
- "VCU_BXD_PFC_CIE_Et_0416",
- "VCU BXD PFC CIE EtOH Masked ComBat M430 2.0 (Apr16) RMA"
- ],
- [
- "791",
- "VCU_BXD_PFC_CIE_EtZ_0416",
- "VCU BXD PFC CIE EtOH Masked ComBat M430 2.0 (Apr16) RMA Z-score"
- ],
- [
- "299",
- "VCU_PF_AvE_0111_Ss",
- "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore*"
- ],
- [
- "300",
- "VCU_PF_Et_0111_R",
- "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA"
- ],
- [
- "301",
- "VCU_PF_Air_0111_R",
- "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA"
- ]
- ],
- "Retina mRNA": [
- [
- "709",
- "DoDCMMRPRetMoGene2_0515",
- "DoD Retina Normal Affy MoGene 2.0 ST (May15) RMA Gene Level"
- ],
- [
- "710",
- "DoDCMMRPRetMoGene2Ex_0515",
- "DoD Retina Normal Affy MoGene 2.0 ST (May15) RMA Exon Level"
- ],
- [
- "267",
- "Illum_Retina_BXD_RankInv0410",
- "Full HEI Retina Illumina V6.2 (Apr10) RankInv"
- ],
- [
- "302",
- "G2NEI_ILM_Retina_BXD_RI0410",
- "HEI Retina Normal Illumina V6.2 (Apr10) RankInv"
- ],
- [
- "785",
- "DoDTATRCRetBLMoGene2_0316",
- "DoD Retina After Blast Affy MoGene 2.0 ST (Mar16) RMA Gene Level"
- ],
- [
- "787",
- "DoDRetBlastvsNormal_0416",
- "DoD Retina Blast vs Normal Retina Affy MoGene 2.0 ST (Apr16) RMA Gene Level"
- ],
- [
- "786",
- "DoDTATRCRetBLMoGene2E_0316",
- "DoD Retina After Blast Affy MoGene 2.0 ST (Mar16) RMA Exon Level"
- ],
- [
- "796",
- "DoDRetBlastvsNormalEx_0416",
- "DoD Retina Blast vs Normal Retina Affy MoGene 2.0 ST (Apr16) RMA Exon Level"
- ],
- [
- "385",
- "ONCRetILM6_0412",
- "ONC HEI Retina (April 2012) RankInv"
- ],
- [
- "386",
- "B6D2ONCILM_0412",
- "B6D2 ONC Retina (April 2012) RankInv"
- ],
- [
- "372",
- "G2HEIONCRetILM6_0911",
- "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv"
- ],
- [
- "371",
- "HEIONCvsCRetILM6_0911",
- "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv"
- ]
- ],
- "Spleen mRNA": [
- [
- "283",
- "UTHSC_SPL_RMA_1210",
- "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA"
- ],
- [
- "773",
- "UTHSC_SPLs1_RMA_1210",
- "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Set1"
- ],
- [
- "774",
- "UTHSC_SPLs2_RMA_1210",
- "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Set2"
- ],
- [
- "286",
- "UTHSC_SPL_RMA_1210M",
- "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Males"
- ],
- [
- "287",
- "UTHSC_SPL_RMA_1210F",
- "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Females"
- ],
- [
- "429",
- "UTHSC_SPL_RMAEx_1210",
- "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Exon Level"
- ],
- [
- "271",
- "UTHSC_SPL_RMA_1010",
- "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA"
- ],
- [
- "260",
- "UTK_BXDSpl_VST_0110",
- "UTK Spleen ILM6.1 (Jan10) VST"
- ],
- [
- "227",
- "IoP_SPL_RMA_0509",
- "IoP Affy MOE 430v2 Spleen (May09) RMA"
- ],
- [
- "216",
- "Illum_BXD_Spl_1108",
- "UWA Illumina Spleen (Nov08) RSN*"
- ]
- ],
- "Striatum mRNA": [
- [
- "399",
- "Striatum_Exon_1212",
- "HQF Striatum Affy Mouse Exon 1.0ST Gene Level (Dec09) RMA"
- ],
- [
- "163",
- "Striatum_Exon_0209",
- "HQF Striatum Affy Mouse Exon 1.0ST Exon Level (Dec09) RMA"
- ],
- [
- "376",
- "DevStriatum_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv"
- ],
- [
- "377",
- "DevStriatum_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv"
- ],
- [
- "285",
- "UTHSC_Striatum_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
- ],
- [
- "298",
- "UTHSC_Str_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
- ],
- [
- "152",
- "UTHSC_1107_RankInv",
- "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
- ],
- [
- "74",
- "SA_M2_0405_MC",
- "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
- ],
- [
- "69",
- "SA_M2_0405_RC",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
- ],
- [
- "68",
- "SA_M2_0405_PC",
- "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
- ],
- [
- "67",
- "SA_M2_0405_SS",
- "HBP Rosen Striatum M430V2 (Apr05) SScore"
- ],
- [
- "66",
- "SA_M2_0405_RR",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
- ]
- ],
- "T Cell (helper) mRNA": [
- [
- "319",
- "RTHC_0211_R",
- "HZI Thelp M430v2 (Feb11) RMA"
- ]
- ],
- "T Cell (regulatory) mRNA": [
- [
- "122",
- "RTC_1106_R",
- "HZI Treg M430v2 (Feb11) RMA"
- ]
- ],
- "Thymus mRNA": [
- [
- "217",
- "Illum_BXD_Thy_1108",
- "UWA Illumina Thymus (Nov08) RSN*"
- ]
- ],
- "Ventral Tegmental Area mRNA": [
- [
- "228",
- "VCUSal_0609_R",
- "VCU BXD VTA Sal M430 2.0 (Jun09) RMA"
- ],
- [
- "230",
- "VCUEtvsSal_0609_R",
- "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) RMA"
- ],
- [
- "229",
- "VCUEtOH_0609_R",
- "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA"
- ]
- ]
- },
- "BXD-Bone": {
- "Phenotypes": [
- [
- "650",
- "BXD-BonePublish",
- "BXD-Bone Phenotypes"
- ]
- ]
- },
- "BXD-Harvested": {
- "Genotypes": [
- [
- "None",
- "BXD-HarvestedGeno",
- "BXD-Harvested Genotypes"
- ]
- ],
- "Hippocampus Proteome": [
- [
- "873",
- "JAX-BXD-Hip-Pro-0219",
- "JAX BXD Hippocampal Proteome (Feb19)"
- ]
- ],
- "Liver DNAm": [
- [
- "890",
- "INIA-BXD-LivDNAm-1119",
- "INIA BXD Liver DNAm CD-HFD (Nov19) Sesame"
- ]
- ],
- "Liver Proteome": [
- [
- "886",
- "EPFL-ETHZ-BXD-LivProtCD-HF-1119",
- "EPFL/ETHZ BXD Liver Proteome CD-HFD (Nov19)"
- ]
- ],
- "Liver mRNA": [
- [
- "877",
- "UTHSC-BXD-Harv_Liv-1019",
- "UTHSC BXD Harvested Liver RNA-Seq (Oct19) TPM Log2"
- ],
- [
- "850",
- "UTHSC-BXD-Liv-0818",
- "UTHSC BXD Liver Affy Clariom S GeneLevel Main (Aug18) RMA"
- ],
- [
- "843",
- "UTHSC-BXD-Harv_Liv-0118",
- "UTHSC BXD Harvested Liver RNA-Seq (Aug18) Log2"
- ],
- [
- "842",
- "UTHSC-BXD-Liv-0917",
- "UTHSC BXD Liver Affy Clariom S GeneLevel Main (Sep17) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "660",
- "BXD-HarvestedPublish",
- "BXD-NIA-Longevity Phenotypes"
- ]
- ]
- },
- "BXD300": {
- "Genotypes": [
- [
- "None",
- "BXD300Geno",
- "BXD300 Genotypes"
- ]
- ],
- "Liver mRNA": [
- [
- "105",
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "103",
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "104",
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "BXD300Publish",
- "BXD300 Published Phenotypes"
- ]
- ]
- },
- "BXH": {
- "Bone Femur mRNA": [
- [
- "412",
- "UCLA_BXH_Femur_0113_RSN",
- "UCLA GSE27483 BXH Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN"
- ]
- ],
- "Cartilage mRNA": [
- [
- "209",
- "UCLA_BXHBXD_CARTILAGE_V2",
- "UCLA BXH and BXD Cartilage v2"
- ],
- [
- "205",
- "UCLA_BXHBXD_CARTILAGE",
- "UCLA BXH and BXD Cartilage"
- ],
- [
- "179",
- "UCLA_BXH_CARTILAGE",
- "UCLA BXH Cartilage"
- ]
- ],
- "Genotypes": [
- [
- "638",
- "BXHGeno",
- "BXH Genotypes"
- ]
- ],
- "Liver mRNA": [
- [
- "353",
- "GSE16780BXH_UCLA_ML0911",
- "GSE16780 UCLA Mouse BXH Liver Affy HT M430A (Sep11) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "627",
- "BXHPublish",
- "BXH Published Phenotypes"
- ]
- ]
- },
- "C57BL-6JxC57BL-6NJF2": {
- "Genotypes": [
- [
- "622",
- "C57BL-6JxC57BL-6NJF2Geno",
- "C57BL-6JxC57BL-6NJF2 Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "620",
- "C57BL-6JxC57BL-6NJF2Publish",
- "C57BL/6JxC57BL/6NJ F2 CROSS Phenotypes"
- ]
- ]
- },
- "CC": {
- "Genotypes": [
- [
- "663",
- "CCGeno",
- "CC Genotypes"
- ]
- ],
- "Midbrain mRNA": [
- [
- "894",
- "LSRU-CC-ST-1219",
- "LSRU CC Male Midbrain RNA-Seq (Dec19) TPM Log2"
- ]
- ],
- "Phenotypes": [
- [
- "662",
- "CCPublish",
- "CC Phenotypes"
- ]
- ]
- },
- "CFW": {
- "Hippocampus mRNA": [
- [
- "811",
- "UCSD_CFW_HIP_RNA-Seq_log2_0117",
- "UCSD CFW Hippocampus (Jan17) RNA-Seq Log2 Z-score"
- ],
- [
- "808",
- "UCSD_CFW_HIP_RNA-Seq_0117",
- "UCSD CFW Hippocampus RNA-Seq (Jan17) FPKM Quantile"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "CFWPublish",
- "CFW Phenotypes"
- ]
- ],
- "Prefrontal Cortex mRNA": [
- [
- "813",
- "UCSD_CFW_PFC_RNA-Seq_log2_0117",
- "UCSD CFW Prefrontal Cortex (Jan17) RNA-Seq Log2 Z-score"
- ],
- [
- "810",
- "UCSD_CFW_PFC_RNA-Seq_0117",
- "UCSD CFW Prefrontal Cortex (Jan17) RNA-Seq"
- ]
- ],
- "Striatum mRNA": [
- [
- "812",
- "UCSD_CFW_STR_RNA-Seq_log2_0117",
- "UCSD CFW Striatum (Jan17) RNA-Seq Log2 Z-score"
- ],
- [
- "809",
- "UCSD_CFW_SPL_RNA-Seq_0117",
- "UCSD CFW Striatum (Jan17) RNA-Seq"
- ]
- ]
- },
- "CIE-INIA": {
- "LCM Brain Regions mRNA": [
- [
- "776",
- "INIA_LCM_CAB_1215",
- "INIA LCM (11 Regions) CIE/AIR/BAS RNA-seq Transcript Level (Dec15)"
- ],
- [
- "772",
- "INIA_LCM_1215",
- "INIA LCM (11 Regions) CIE/AIR RNA-seq Transcript Level (Dec15)"
- ],
- [
- "775",
- "INIA_LCMB_1215",
- "INIA LCM (11 Regions) BASELINE RNA-seq Transcript Level (Dec15)"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "CIE-INIAPublish",
- "LCM Phenotypes"
- ]
- ]
- },
- "CIE-RMA": {
- "Hippocampus mRNA": [
- [
- "831",
- "INIA_UTHSC_Hip_AffyMTA1_May17",
- "INIA-UTHSC Hippocampus CIE Affy MTA 1.0 GeneLevel (Mar18) RMA"
- ]
- ],
- "Midbrain mRNA": [
- [
- "830",
- "INIA_UTHSC_Mid_AffyMTA1_Apr17",
- "INIA-UTHSC Midbrain CIE Affy MTA 1.0 GeneLevel (Apr17) RMA"
- ],
- [
- "834",
- "INIA_UTHSC_Mid_AffyMTA1_Ex_May17",
- "INIA-UTHSC Midbrain CIE Affy MTA 1.0 Exon Level (Apr17) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "CIE-RMAPublish",
- "CIE-RMA Phenotypes"
- ]
- ],
- "Prefrontal Cortex mRNA": [
- [
- "832",
- "INIA_UTHSC_PFC_AffyMTA1_May17",
- "INIA-UTHSC Prefrontal Cortex CIE Affy MTA 1.0 GeneLevel (Apr17) RMA"
- ]
- ],
- "Striatum mRNA": [
- [
- "833",
- "INIA_UTHSC_Str_AffyMTA1_May17",
- "INIA-UTHSC Striatum CIE Affy MTA 1.0 GeneLevel (Apr17) RMA"
- ]
- ]
- },
- "CMS": {
- "Hippocampus mRNA": [
- [
- "771",
- "CMS_Hipp1115",
- "Hippocampus Mouse Transcriptome Assay 1.0 Gene Level Main (Nov15) RMA"
- ],
- [
- "800",
- "CMS_Hipp_ZScr_1115",
- "Hippocampus Mouse Transcriptome Assay 1.0 Gene Level Z-Score (Nov15) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "CMSPublish",
- "CMS Phenotypes"
- ]
- ]
- },
- "CTB6F2": {
- "Adipose mRNA": [
- [
- "170",
- "UCLA_CTB6B6CTF2_ADIPOSE_2005",
- "UCLA CTB6/B6CTF2 Adipose (2005) mlratio"
- ],
- [
- "189",
- "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
- "UCLA CTB6B6CTF2 Adipose Female mlratio"
- ],
- [
- "188",
- "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
- "UCLA CTB6B6CTF2 Adipose Male mlratio"
- ]
- ],
- "Brain mRNA": [
- [
- "171",
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio"
- ],
- [
- "190",
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6/B6CTF2 Brain Males (2005) mlratio"
- ],
- [
- "191",
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6/B6CTF2 Brain Females (2005) mlratio"
- ]
- ],
- "Genotypes": [
- [
- "None",
- "CTB6F2Geno",
- "CTB6F2 Genotypes"
- ]
- ],
- "Liver mRNA": [
- [
- "172",
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio"
- ],
- [
- "193",
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio"
- ],
- [
- "192",
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio"
- ]
- ],
- "Muscle mRNA": [
- [
- "173",
- "UCLA_CTB6B6CTF2_MUSCLE_2005",
- "UCLA CTB6/B6CTF2 Muscle (2005) mlratio"
- ],
- [
- "195",
- "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
- "UCLA CTB6B6CTF2 Muscle Female mlratio"
- ],
- [
- "194",
- "UCLA_CTB6B6CTF2_MUSCLE_MALE",
- "UCLA CTB6B6CTF2 Muscle Male mlratio"
- ]
- ],
- "Phenotypes": [
- [
- "630",
- "CTB6F2Publish",
- "CastB6/B6Cast F2 UCLA Published Phenotypes"
- ]
- ]
- },
- "CXB": {
- "Genotypes": [
- [
- "614",
- "CXBGeno",
- "CXB Genotypes"
- ]
- ],
- "Heart mRNA": [
- [
- "821",
- "UCLA_CXB_Aor_Jan16",
- "UCLA CXB Aorta Affy M430 2.0 (Jan16) RMA"
- ]
- ],
- "Hippocampus mRNA": [
- [
- "99",
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
- [
- "100",
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ]
- ],
- "Liver mRNA": [
- [
- "823",
- "UCLA_CXB_Liv_Jan16",
- "UCLA CXB Liver Affy M430 2.0 (Jan16) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "628",
- "CXBPublish",
- "CXB Published Phenotypes"
- ]
- ],
- "Spleen mRNA": [
- [
- "153",
- "STSPL_1107_R",
- "Stuart Spleen M430v2 (Nov07) RMA"
- ]
- ]
- },
- "D2GM": {
- "Phenotypes": [
- [
- "None",
- "D2GMPublish",
- "D2GM Phenotypes"
- ]
- ],
- "Retina mRNA": [
- [
- "847",
- "JAX_D2GM_RSeq_log2Z_0418",
- "JAX Retina (Apr18) RNA-Seq log2-Z"
- ]
- ]
- },
- "DOD-BXD-GWI": {
- "Genotypes": [
- [
- "None",
- "DOD-BXD-GWIGeno",
- "DOD-BXD-GWI Genotypes"
- ]
- ],
- "Prefrontal Cortex mRNA": [
- [
- "895",
- "DOD-BXD-Ind-PFC-CD-RNA-Seq-ComB-1019",
- "DOD BXD INDV PFC GWI CD RNA-Seq ComB (Dec19) TPM Log2"
- ],
- [
- "896",
- "DOD-BXD-Ind-PFC-CTL-RNA-Seq-ComB-1019",
- "DOD BXD INDV PFC GWI CTL RNA-Seq ComB (Dec19) TPM Log2"
- ],
- [
- "897",
- "DOD-BXD-Ind-PFC-DFP-RNA-Seq-ComB-1019",
- "DOD BXD INDV PFC GWI DFP RNA-Seq ComB (Dec19) TPM Log2"
- ],
- [
- "880",
- "DOD-BXD-Ind-PFC-CD-RNA-Seq-1019",
- "DOD BXD INDV PFC GWI CD RNA-Seq (Oct19) TPM Log2"
- ],
- [
- "881",
- "DOD-BXD-Ind-PFC-CTL-RNA-Seq-1019",
- "DOD BXD INDV PFC GWI CTL RNA-Seq (Oct19) TPM Log2"
- ],
- [
- "882",
- "DOD-BXD-Ind-PFC-DFP-RNA-Seq-1019",
- "DOD BXD INDV PFC GWI DFP RNA-Seq (Oct19) TPM Log2"
- ]
- ]
- },
- "EMSR": {
- "Hippocampus mRNA": [
- [
- "825",
- "UTHSC_EMSR_All_AffyMTA1_Mar17",
- "UTHSC Hippocampus All Treatments Affy MTA 1.0 Gene Level (Mar17) RMA"
- ],
- [
- "826",
- "UTHSC_EMSR_Sal_AffyMTA1_Mar17",
- "UTHSC Hippocampus Saline Affy MTA 1.0 Gene Level (Mar17) RMA"
- ],
- [
- "827",
- "UTHSC_EMSR_Et_AffyMTA1_Mar17",
- "UTHSC Hippocampus Ethanol Affy MTA 1.0 Gene Level (Mar17) RMA"
- ],
- [
- "828",
- "UTHSC_EMSR_St_AffyMTA1_Mar17",
- "UTHSC Hippocampus Stress Affy MTA 1.0 Gene Level (Mar17) RMA"
- ],
- [
- "829",
- "UTHSC_EMSR_EtSt_AffyMTA1_Mar17",
- "UTHSC Hippocampus Ethanol-Stress Affy MTA 1.0 Gene Level (Mar17) RMA"
- ]
- ]
- },
- "HET3-ITP": {
- "Genotypes": [
- [
- "None",
- "HET3-ITPGeno",
- "HET3-ITP Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "661",
- "HET3-ITPPublish",
- "HET3 ITP Longevity Phenotypes"
- ]
- ]
- },
- "HS": {
- "Hippocampus mRNA": [
- [
- "268",
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ]
- ],
- "Liver mRNA": [
- [
- "269",
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ]
- ],
- "Lung mRNA": [
- [
- "270",
- "OXUKHS_ILMLung_RI0510",
- "OX UK HS ILM6v1.1 Lung (May 2010) RankInv"
- ]
- ],
- "Phenotypes": [
- [
- "624",
- "HSPublish",
- "Heterogeneous Stock Phenotypes"
- ]
- ]
- },
- "HS-CC": {
- "Striatum mRNA": [
- [
- "304",
- "OHSU_HS-CC_ILMStr_0211",
- "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
- ]
- ]
- },
- "JAX-D2-Mono-RNA-Seq": {
- "Retina mRNA": [
- [
- "878",
- "JAX-D2-Mono1vPBMC-Ret-RNA-Seq-0619",
- "JAX DBA/2J Monocyte 1 vs PBMC RNA-Seq (Jun19)"
- ],
- [
- "879",
- "JAX-D2-Mono2vPBMC-Ret-RNA-Seq-0619",
- "JAX DBA/2J Monocyte 2 vs PBMC RNA-Seq (Jun19)"
- ]
- ]
- },
- "LGSM-AI": {
- "Hippocampus mRNA": [
- [
- "874",
- "UCSD_AIL_HIP_RNA-Seq_log2_0418",
- "UCSD AIL Hippocampus (Apr18) RNA-Seq Log2"
- ],
- [
- "844",
- "UCSD_AIL_HIP_RNA-Seq_0418",
- "UCSD AIL Hippocampus (Apr18) RNA-Seq"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "LGSM-AIPublish",
- "LGSM AI Phenotypes"
- ]
- ],
- "Prefrontal Cortex mRNA": [
- [
- "876",
- "UCSD_AIL_PFC_RNA-Seq_log2_0418",
- "UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq Log2"
- ],
- [
- "846",
- "UCSD_AIL_PFC_RNA-Seq_0418",
- "UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq"
- ]
- ],
- "Striatum mRNA": [
- [
- "875",
- "UCSD_AIL_STR_RNA-Seq_log2_0418",
- "UCSD AIL Striatum (Apr18) RNA-Seq Log2"
- ],
- [
- "845",
- "UCSD_AIL_STR_RNA-Seq_0418",
- "UCSD AIL Striatum (Apr18) RNA-Seq"
- ]
- ]
- },
- "LGSM-AI-G34-A": {
- "Phenotypes": [
- [
- "655",
- "LGSM-AI-G34-APublish",
- "LGSM AI G34 Phenotypes"
- ]
- ]
- },
- "LGSM-AI-G34-GBS": {
- "Phenotypes": [
- [
- "656",
- "LGSM-AI-G34-GBSPublish",
- "LGSM AI G34 GBS Phenotypes"
- ]
- ]
- },
- "LGSM-AI-G34_39-43-GBS": {
- "Phenotypes": [
- [
- "657",
- "LGSM-AI-G34_39-43-GBSPublish",
- "LGSM AI G34 G39-43 GBS Phenotypes"
- ]
- ]
- },
- "LGSM-AI-G39-43-GBS": {
- "Phenotypes": [
- [
- "654",
- "LGSM-AI-G39-43-GBSPublish",
- "LGSM AI G39-43 GBS Phenotypes"
- ]
- ]
- },
- "LGSM-AIG34_50-56-GBS": {
- "Phenotypes": [
- [
- "659",
- "LGSM-AIG34_50-56-GBSPublish",
- "LGSM AI G34/50-56 GBS Phenotypes"
- ]
- ]
- },
- "LXS": {
- "Brain mRNA": [
- [
- "783",
- "UCAMC_LXSBrEtOH_RNA-Seq_0216",
- "UCAMC LXS Whole Brain Ethanol RNA Sequence (Feb16) FPKM*"
- ],
- [
- "784",
- "UCAMC_LXSBrSal_RNA-Seq_0216",
- "UCAMC LXS Whole Brain Saline RNA Sequence (Feb16) FPKM*"
- ]
- ],
- "Genotypes": [
- [
- "601",
- "LXSGeno",
- "LXS Genotypes"
- ]
- ],
- "Hippocampus mRNA": [
- [
- "211",
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
- [
- "213",
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
- [
- "219",
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
- ],
- [
- "212",
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "214",
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
- [
- "143",
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
- ],
- [
- "142",
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
- ],
- [
- "141",
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
- [
- "140",
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
- [
- "139",
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
- [
- "138",
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
- [
- "133",
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ]
- ],
- "Phenotypes": [
- [
- "606",
- "LXSPublish",
- "LXS Published Phenotypes"
- ]
- ],
- "Prefrontal Cortex mRNA": [
- [
- "130",
- "VCUSal_0806_R",
- "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
- ],
- [
- "132",
- "VCUEt_vs_Sal_0806_R",
- "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore*"
- ],
- [
- "131",
- "VCUEtOH_0806_R",
- "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA"
- ]
- ]
- },
- "Linsenbardt-Boehm": {
- "Genotypes": [
- [
- "None",
- "Linsenbardt-BoehmGeno",
- "Linsenbardt-Boehm Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "645",
- "Linsenbardt-BoehmPublish",
- "Linsenbardt-Boehm Published Phenotypes"
- ]
- ]
- },
- "MDP": {
- "Bone Femur mRNA": [
- [
- "413",
- "UCLA_MDP_Femur_0113_RSN",
- "UCLA GSE27483 MDP Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN"
- ]
- ],
- "Dorsal Root Ganglia mRNA": [
- [
- "402",
- "TSRI-DRG-AffyMOE430_0113-MDP",
- "TSRI DRG Affy Mouse Genome 430 2.0 (Jan13) RMA MDP"
- ]
- ],
- "Genotypes": [
- [
- "609",
- "MDPGeno",
- "MDP Genotypes"
- ]
- ],
- "Hippocampus mRNA": [
- [
- "272",
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
- [
- "273",
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "594",
- "UFL-MDP-Hipp0814",
- "UFL MDP Hippocampus Antidepressant Affy Mouse 430 2.0 (Aug14) RMA"
- ]
- ],
- "Liver mRNA": [
- [
- "370",
- "GSE16780MDP_UCLA_ML0911",
- "GSE16780 UCLA Mouse MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "357",
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "358",
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "359",
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "403",
- "JAX_liver_agil_MDP-0113",
- "Harrill-Rusyn MDP Liver Acetaminophen Tox Study (G4121A, 2009)"
- ]
- ],
- "Phenotypes": [
- [
- "605",
- "MDPPublish",
- "Mouse Phenome Database"
- ]
- ],
- "Spleen mRNA": [
- [
- "801",
- "HMS_mm8_MDP_Spl_CD4_1116",
- "HMS Spleen CD4+ T cells MDP Affy Mouse Gene 1.0 ST (Jul16) Gene Level"
- ]
- ]
- },
- "NZBXFVB-N2": {
- "Mammary Tumors mRNA": [
- [
- "225",
- "NCI_Mam_Tum_RMA_0409",
- "NCI Mammary M430v2 (Apr09) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "607",
- "NZBXFVB-N2Publish",
- "NZBXFVB-N2 Published Phenotypes"
- ]
- ]
- },
- "Retina-RGC-Rheaume": {
- "Phenotypes": [
- [
- "None",
- "Retina-RGC-RheaumePublish",
- "Retina-RGC-Rheaume Phenotypes"
- ]
- ],
- "Retina Single-cell RNA-Seq": [
- [
- "865",
- "UConn-RGC-RSeq_r-0918",
- "UConn-Rheaume Retina RGC (Sep18) scRNA-Seq Raw"
- ],
- [
- "866",
- "UConn-RGC-RSeq_log2-0918",
- "UConn-Rheaume Retina RGC (Sep18) scRNA-Seq Log2"
- ],
- [
- "867",
- "UConn-RGC-RSeq_s-0918",
- "UConn-Rheaume Retina RGC (Sep18) scRNA-Seq Siamak"
- ]
- ]
- },
- "SOTNOT-OHSU": {
- "Genotypes": [
- [
- "613",
- "SOTNOT-OHSUGeno",
- "SOTNOT-OHSU Genotypes"
- ]
- ]
- },
- "Scripps-2013": {
- "Anterior Cingulate Cortex mRNA": [
- [
- "450",
- "ScrBXDACC4G0513",
- "Scripps BXD ACC 4 Groups Affy Mouse Gene 1.0 ST (May13) RMA Gene Level"
- ],
- [
- "451",
- "ScrBXDACC4GEx0513",
- "Scripps BXD ACC 4 Groups Affy Mouse Gene 1.0 ST (May13) RMA Exon Level"
- ]
- ]
- },
- "UTHSC-Cannabinoid": {
- "Genotypes": [
- [
- "None",
- "UTHSC-CannabinoidGeno",
- "UTHSC-Cannabinoid Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "UTHSC-CannabinoidPublish",
- "UTHSC Cannabinoid Pilot Phenotypes"
- ]
- ]
- }
- },
- "poplar": {
- "Poplar": {
- "Phenotypes": [
- [
- "649",
- "PoplarPublish",
- "Poplar Phenotypes"
- ]
- ]
- }
- },
- "rat": {
- "HSNIH-Palmer": {
- "Infralimbic Cortex mRNA": [
- [
- "861",
- "HSNIH-Rat-IL-RSeq-0818",
- "HSNIH-Palmer Infralimbic Cortex RNA-Seq (Aug18) rlog"
- ]
- ],
- "Lateral Habenula mRNA": [
- [
- "862",
- "HSNIH-Rat-LHB-RSeq-0818",
- "HSNIH-Palmer Lateral Habenula RNA-Seq (Aug18) rlog"
- ]
- ],
- "Nucleus Accumbens mRNA": [
- [
- "860",
- "HSNIH-Rat-Acbc-RSeq-0818",
- "HSNIH-Palmer Nucleus Accumbens Core RNA-Seq (Aug18) rlog"
- ]
- ],
- "Orbitofrontal Cortex mRNA": [
- [
- "864",
- "HSNIH-Rat-VoLo-RSeq-0818",
- "HSNIH-Palmer Orbitofrontal Cortex RNA-Seq (Aug18) rlog"
- ]
- ],
- "Phenotypes": [
- [
- "652",
- "HSNIH-PalmerPublish",
- "HSNIH Phenotypes"
- ]
- ],
- "Prelimbic Cortex mRNA": [
- [
- "863",
- "HSNIH-Rat-PL-RSeq-0818",
- "HSNIH-Palmer Prelimbic Cortex RNA-Seq (Aug18) rlog"
- ]
- ],
- "Prefrontal Cortex mRNA": [
- [
- "864",
- "HSNIH-Rat-VoLo-RSeq-0818",
- "HSNIH-Palmer Orbitofrontal Cortex RNA-Seq (Aug18) rlog"
- ],
- [
- "863",
- "HSNIH-Rat-PL-RSeq-0818",
- "HSNIH-Palmer Prelimbic Cortex RNA-Seq (Aug18) rlog"
- ],
- [
- "861",
- "HSNIH-Rat-IL-RSeq-0818",
- "HSNIH-Palmer Infralimbic Cortex RNA-Seq (Aug18) rlog"
- ]
- ]
- },
- "HSNIH-RGSMC": {
- "Phenotypes": [
- [
- "None",
- "HSNIH-RGSMCPublish",
- "HSNIH Published Phenotypes"
- ]
- ]
- },
- "HXBBXH": {
- "Adipose mRNA": [
- [
- "799",
- "FGUCAS_BAdip0516",
- "FGUCAS BXH/HXB Brown Adipose Affy Rat Gene 2.0 ST (May16) log2"
- ]
- ],
- "Adrenal Gland mRNA": [
- [
- "220",
- "HXB_Adrenal_1208",
- "MDC/CAS/UCL Adrenal 230A (Dec08) RMA"
- ]
- ],
- "Genotypes": [
- [
- "None",
- "HXBBXHGeno",
- "HXBBXH Genotypes"
- ]
- ],
- "Heart mRNA": [
- [
- "221",
- "HXB_Heart_1208",
- "MDC/CAS/UCL Heart 230_V2 (Dec08) RMA"
- ]
- ],
- "Hippocampus mRNA": [
- [
- "231",
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ]
- ],
- "Kidney mRNA": [
- [
- "70",
- "KI_2A_0405_M",
- "MDC/CAS/ICL Kidney 230A (Apr05) MAS5"
- ],
- [
- "65",
- "KI_2A_0405_Rz",
- "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8"
- ],
- [
- "64",
- "KI_2A_0405_R",
- "MDC/CAS/ICL Kidney 230A (Apr05) RMA"
- ]
- ],
- "Liver mRNA": [
- [
- "222",
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ]
- ],
- "Peritoneal Fat mRNA": [
- [
- "79",
- "FT_2A_0805_M",
- "MDC/CAS/ICL Peritoneal Fat 230A (Aug05) MAS5"
- ],
- [
- "75",
- "FT_2A_0605_Rz",
- "MDC/CAS/ICL Peritoneal Fat 230A (Jun05) RMA 2z+8"
- ]
- ],
- "Phenotypes": [
- [
- "632",
- "HXBBXHPublish",
- "HXB/BXH Published Phenotypes"
- ]
- ]
- },
- "SRxSHRSPF2": {
- "Eye mRNA": [
- [
- "226",
- "UIOWA_Eye_RMA_0906",
- "UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
- ]
- ]
- }
- },
- "soybean": {
- "J12XJ58F11": {
- "Genotypes": [
- [
- "None",
- "J12XJ58F11Geno",
- "J12XJ58F11 Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "647",
- "J12XJ58F11Publish",
- "J12XJ58F11 Phenotypes"
- ]
- ]
- },
- "J12XJ58F2": {
- "Phenotypes": [
- [
- "616",
- "J12XJ58F2Publish",
- "J12XJ58F2 Published Phenotypes"
- ]
- ]
- }
- },
- "tomato": {
- "LXP": {
- "Phenotypes": [
- [
- "621",
- "LXPPublish",
- "LXP Published Phenotypes"
- ]
- ]
- }
- }
- },
- "groups": {
- "arabidopsis": [
- [
- "BayXSha",
- "BayXSha",
- "Family:None"
- ],
- [
- "ColXBur",
- "ColXBur",
- "Family:None"
- ],
- [
- "ColXCvi",
- "ColXCvi",
- "Family:None"
- ]
- ],
- "barley": [
- [
- "QSM",
- "QSM",
- "Family:None"
- ],
- [
- "SXM",
- "SXM",
- "Family:None"
- ]
- ],
- "drosophila": [
- [
- "DGRP",
- "Drosophila Genetic Reference Panel",
- "Family:None"
- ],
- [
- "Oregon-R_x_2b3",
- "Oregon-R x 2b3",
- "Family:None"
- ]
- ],
- "human": [
- [
- "HB",
- "Brain, Aging: AD, HD, Normal Gene Expression (Harvard/Merck)",
- "Family:None"
- ],
- [
- "AD-cases-controls",
- "Brain, Aging: AD, Normal Gene Expression (Liang)",
- "Family:None"
- ],
- [
- "AD-cases-controls-Myers",
- "Brain, Aging: AD, Normal Gene Expression with Genotypes (Myers)",
- "Family:None"
- ],
- [
- "Aging-Brain-UCI",
- "Brain, Aging: Normal Gene Expression (UCI/Cotman)",
- "Family:None"
- ],
- [
- "HCP",
- "Brain, Cognition, Human Connectome Project",
- "Family:None"
- ],
- [
- "HSB",
- "Brain, Development: Normal Gene Expression (Yale/Sestan)",
- "Family:None"
- ],
- [
- "Brain-Normal-NIH-Gibbs",
- "Brain: Normal Gene Expression (NIH/Gibbs)",
- "Family:None"
- ],
- [
- "CANDLE",
- "Child Development: CANDLE Cohort with Genotypes (TUCI/UTHSC)",
- "Family:None"
- ],
- [
- "GTEx",
- "GTEx v3 All Tissues, RNA-Seq with Genotypes",
- "Family:None"
- ],
- [
- "GTEx_v5",
- "GTEx v5 All Tissues, RNA-Seq with Genotypes",
- "Family:None"
- ],
- [
- "GTEx_v8",
- "GTEx v8 All Tissues, RNA-Seq without Genotypes",
- "Family:None"
- ],
- [
- "HLC",
- "Liver: Normal Gene Expression with Genotypes (Merck)",
- "Family:None"
- ],
- [
- "HLT",
- "Lung: Normal Gene Expression (Merck)",
- "Family:None"
- ],
- [
- "CEPH-2004",
- "Lymphoblastoid Cells: Gene Expression (CEPH, Williams)",
- "Family:None"
- ],
- [
- "Islets-Gerling",
- "Pancreatic: Islets (UTHSC/Gerling)",
- "Family:None"
- ],
- [
- "TIGEM-Retina-RNA-Seq",
- "Retina: Normal Adult Gene Expression, RNA-Seq (TIGEM)",
- "Family:None"
- ]
- ],
- "macaque monkey": [
- [
- "Macaca-fasicularis",
- "Macaca fasicularis (Cynomolgus monkey)",
- "Family:None"
- ]
- ],
- "mouse": [
- [
- "AKXD",
- "AKXD Family",
- "Family:Reference Populations"
- ],
- [
- "AXBXA",
- "AXB/BXA Family",
- "Family:Reference Populations"
- ],
- [
- "BXD",
- "BXD Family",
- "Family:Reference Populations"
- ],
- [
- "BXH",
- "BXH Family",
- "Family:Reference Populations"
- ],
- [
- "CC",
- "CC Family",
- "Family:Reference Populations"
- ],
- [
- "CXB",
- "CXB Family",
- "Family:Reference Populations"
- ],
- [
- "LXS",
- "ILSXISS (LXS) Family",
- "Family:Reference Populations"
- ],
- [
- "MDP",
- "Mouse Diversity Panel",
- "Family:Reference Populations"
- ],
- [
- "B6D2RI",
- "BXD Aged Hippocampus",
- "Family:BXD Individual Data"
- ],
- [
- "BXD-Bone",
- "BXD Bone Individual Data",
- "Family:BXD Individual Data"
- ],
- [
- "DOD-BXD-GWI",
- "BXD DOD Gulf War Illness",
- "Family:BXD Individual Data"
- ],
- [
- "BXD-Harvested",
- "BXD NIA Longevity Study",
- "Family:BXD Individual Data"
- ],
- [
- "UTHSC-Cannabinoid",
- "BXD UTHSC Cannabinoid Pilot",
- "Family:BXD Individual Data"
- ],
- [
- "B6BTBRF2",
- "B6BTBRF2",
- "Family:Crosses, AIL, HS"
- ],
- [
- "BHHBF2",
- "B6C3HF2 UCLA Metabolism",
- "Family:Crosses, AIL, HS"
- ],
- [
- "BHF2",
- "B6C3HF2(APOE-) UCLA Metabolism",
- "Family:Crosses, AIL, HS"
- ],
- [
- "Linsenbardt-Boehm",
- "B6D2 EtOH Selected Advanced Intercross",
- "Family:Crosses, AIL, HS"
- ],
- [
- "B6D2F2",
- "B6D2F2 OHSU Brain",
- "Family:Crosses, AIL, HS"
- ],
- [
- "BDF2-2005",
- "B6D2F2 OHSU Striatum",
- "Family:Crosses, AIL, HS"
- ],
- [
- "B6D2F2-PSU",
- "B6D2F2 PSU Muscle",
- "Family:Crosses, AIL, HS"
- ],
- [
- "BDF2-1999",
- "B6D2F2 UCLA Liver",
- "Family:Crosses, AIL, HS"
- ],
- [
- "CTB6F2",
- "CastB6/B6Cast F2 UCLA",
- "Family:Crosses, AIL, HS"
- ],
- [
- "CFW",
- "CFW Outbred GWAS",
- "Family:Crosses, AIL, HS"
- ],
- [
- "HET3-ITP",
- "HET3 ITP Longevity",
- "Family:Crosses, AIL, HS"
- ],
- [
- "HS",
- "Heterogeneous Stock",
- "Family:Crosses, AIL, HS"
- ],
- [
- "HS-CC",
- "Heterogeneous Stock Collaborative Cross",
- "Family:Crosses, AIL, HS"
- ],
- [
- "LGSM-AI-G34_39-43-GBS",
- "LGSM AI G34 G39-43 Palmer (GBS)",
- "Family:Crosses, AIL, HS"
- ],
- [
- "LGSM-AI-G34-A",
- "LGSM AI G34 Palmer (Array)",
- "Family:Crosses, AIL, HS"
- ],
- [
- "LGSM-AI-G34-GBS",
- "LGSM AI G34 Palmer (GBS)",
- "Family:Crosses, AIL, HS"
- ],
- [
- "LGSM-AIG34_50-56-GBS",
- "LGSM AI G34/50-56 Lionikas (GBS)",
- "Family:Crosses, AIL, HS"
- ],
- [
- "LGSM-AI-G39-43-GBS",
- "LGSM AI G39-43 Palmer (GBS)",
- "Family:Crosses, AIL, HS"
- ],
- [
- "LGSM-AI",
- "LGSM AI Palmer",
- "Family:Crosses, AIL, HS"
- ],
- [
- "SOTNOT-OHSU",
- "SOTNOT-OHSU",
- "Family:Crosses, AIL, HS"
- ],
- [
- "B6-Lens",
- "B6 Lens",
- "Family:Non-genetic Cohort"
- ],
- [
- "CIE-INIA",
- "Chronic Intermittent Ethanol Phase 1",
- "Family:Non-genetic Cohort"
- ],
- [
- "CIE-RMA",
- "Chronic Intermittent Ethanol Phase 2",
- "Family:Non-genetic Cohort"
- ],
- [
- "CMS",
- "Chronic Mild Stress",
- "Family:Non-genetic Cohort"
- ],
- [
- "D2GM",
- "D2 Glaucoma Model",
- "Family:Non-genetic Cohort"
- ],
- [
- "JAX-D2-Mono-RNA-Seq",
- "D2 Glaucoma Monocyte JAX",
- "Family:Non-genetic Cohort"
- ],
- [
- "EMSR",
- "Ethanol-Medicated Stress Reduction",
- "Family:Non-genetic Cohort"
- ],
- [
- "B6D2",
- "Glaucoma and Aged Retina UTHSC",
- "Family:Non-genetic Cohort"
- ],
- [
- "NZBXFVB-N2",
- "NZB/FVB N2 NCI",
- "Family:Non-genetic Cohort"
- ],
- [
- "C57BL-6JxC57BL-6NJF2",
- "Reduced Complexity Cross (B6JxB6N F2)",
- "Family:Non-genetic Cohort"
- ],
- [
- "Retina-RGC-Rheaume",
- "Retina RGC Rheaume",
- "Family:Non-genetic Cohort"
- ],
- [
- "Scripps-2013",
- "Scripps C57BL/6J",
- "Family:Non-genetic Cohort"
- ],
- [
- "BXD300",
- "BXD300",
- "Family:None"
- ]
- ],
- "poplar": [
- [
- "Poplar",
- "Poplar",
- "Family:None"
- ]
- ],
- "rat": [
- [
- "HXBBXH",
- "Hybrid Rat Diversity Panel (Includes HXB/BXH)",
- "Family:None"
- ],
- [
- "HSNIH-Palmer",
- "NIH Heterogeneous Stock (Palmer)",
- "Family:None"
- ],
- [
- "HSNIH-RGSMC",
- "NIH Heterogeneous Stock (RGSMC 2013)",
- "Family:None"
- ],
- [
- "SRxSHRSPF2",
- "UIOWA SRxSHRSP F2",
- "Family:None"
- ]
- ],
- "soybean": [
- [
- "J12XJ58F11",
- "J12XJ58F11",
- "Family:None"
- ],
- [
- "J12XJ58F2",
- "J12XJ58F2",
- "Family:None"
- ]
- ],
- "tomato": [
- [
- "LXP",
- "LXP",
- "Family:None"
- ]
- ]
- },
- "species": [
- [
- "human",
- "Human (hg19)"
- ],
- [
- "macaque monkey",
- "Macaque monkey"
- ],
- [
- "mouse",
- "Mouse (mm10)"
- ],
- [
- "rat",
- "Rat (rn6)"
- ],
- [
- "drosophila",
- "Drosophila"
- ],
- [
- "arabidopsis",
- "Arabidopsis thaliana"
- ],
- [
- "barley",
- "Barley"
- ],
- [
- "poplar",
- "Poplar"
- ],
- [
- "soybean",
- "Soybean"
- ],
- [
- "tomato",
- "Tomato"
- ]
- ],
- "types": {
- "arabidopsis": {
- "BayXSha": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ],
- "ColXBur": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ],
- "ColXCvi": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ]
- },
- "barley": {
- "QSM": [
- [
- "Leaf mRNA",
- "Leaf mRNA"
- ]
- ],
- "SXM": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Embryo mRNA",
- "Embryo mRNA"
- ],
- [
- "Leaf mRNA",
- "Leaf mRNA"
- ]
- ]
- },
- "drosophila": {
- "DGRP": [
- [
- "Whole Body mRNA",
- "Whole Body mRNA"
- ]
- ],
- "Oregon-R_x_2b3": [
- [
- "Whole Body mRNA",
- "Whole Body mRNA"
- ]
- ]
- },
- "human": {
- "AD-cases-controls": [
- [
- "Brain mRNA",
- "Brain mRNA"
- ]
- ],
- "AD-cases-controls-Myers": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Brain mRNA",
- "Brain mRNA"
- ]
- ],
- "Aging-Brain-UCI": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Entorhinal Cortex mRNA",
- "Entorhinal Cortex mRNA"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Postcentral Gyrus mRNA",
- "Postcentral Gyrus mRNA"
- ],
- [
- "Superior Frontal Gyrus mRNA",
- "Superior Frontal Gyrus mRNA"
- ]
- ],
- "Brain-Normal-NIH-Gibbs": [
- [
- "Cerebellum mRNA",
- "Cerebellum mRNA"
- ],
- [
- "Pons mRNA",
- "Pons mRNA"
- ],
- [
- "Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
- ],
- [
- "Temporal Cerebral Wall mRNA",
- "Temporal Cerebral Wall mRNA"
- ]
- ],
- "CANDLE": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Methylation",
- "Methylation"
- ],
- [
- "Newborn Cord Blood mRNA",
- "Newborn Cord Blood mRNA"
- ]
- ],
- "CEPH-2004": [
- [
- "Lymphoblast B-cell mRNA",
- "Lymphoblast B-cell mRNA"
- ]
- ],
- "GTEx": [
- [
- "Adipose Tissue, Subcutaneous mRNA",
- "Adipose Tissue, Subcutaneous mRNA"
- ],
- [
- "Adipose Tissue, Visceral mRNA",
- "Adipose Tissue, Visceral mRNA"
- ],
- [
- "Adrenal Gland mRNA",
- "Adrenal Gland mRNA"
- ],
- [
- "Amygdala mRNA",
- "Amygdala mRNA"
- ],
- [
- "Anterior Cingulate Cortex mRNA",
- "Anterior Cingulate Cortex mRNA"
- ],
- [
- "Aorta mRNA",
- "Aorta mRNA"
- ],
- [
- "Blood, Cells - EBV-Transformed Lymphocytes mRNA",
- "Blood, Cells - EBV-Transformed Lymphocytes mRNA"
- ],
- [
- "Breast - Mammary Tissue mRNA",
- "Breast - Mammary Tissue mRNA"
- ],
- [
- "Caudate mRNA",
- "Caudate mRNA"
- ],
- [
- "Cells - EBV-Transformed Lymphocytes mRNA",
- "Cells - EBV-Transformed Lymphocytes mRNA"
- ],
- [
- "Cells - Leukemia Cell Line (CML) mRNA",
- "Cells - Leukemia Cell Line (CML) mRNA"
- ],
- [
- "Cells - Transformed Fibroblasts mRNA",
- "Cells - Transformed Fibroblasts mRNA"
- ],
- [
- "Cerebellar Cortex mRNA",
- "Cerebellar Cortex mRNA"
- ],
- [
- "Cerebellar Hemisphere mRNA",
- "Cerebellar Hemisphere mRNA"
- ],
- [
- "Cerebellum mRNA",
- "Cerebellum mRNA"
- ],
- [
- "Colon - Transverse mRNA",
- "Colon - Transverse mRNA"
- ],
- [
- "Coronary mRNA",
- "Coronary mRNA"
- ],
- [
- "Esophagus - Mucosa mRNA",
- "Esophagus - Mucosa mRNA"
- ],
- [
- "Esophagus - Muscularis mRNA",
- "Esophagus - Muscularis mRNA"
- ],
- [
- "Fallopian Tube mRNA",
- "Fallopian Tube mRNA"
- ],
- [
- "Frontal Cortex mRNA",
- "Frontal Cortex mRNA"
- ],
- [
- "Heart - Atrial Appendage mRNA",
- "Heart - Atrial Appendage mRNA"
- ],
- [
- "Heart - Left Ventricle mRNA",
- "Heart - Left Ventricle mRNA"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Hypothalamus mRNA",
- "Hypothalamus mRNA"
- ],
- [
- "Kidney mRNA",
- "Kidney mRNA"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ],
- [
- "Lung mRNA",
- "Lung mRNA"
- ],
- [
- "Muscle mRNA",
- "Muscle mRNA"
- ],
- [
- "Nerve - Tibial mRNA",
- "Nerve - Tibial mRNA"
- ],
- [
- "Nucleus Accumbens mRNA",
- "Nucleus Accumbens mRNA"
- ],
- [
- "Ovary mRNA",
- "Ovary mRNA"
- ],
- [
- "Pancreas mRNA",
- "Pancreas mRNA"
- ],
- [
- "Pituitary Gland mRNA",
- "Pituitary Gland mRNA"
- ],
- [
- "Prostate mRNA",
- "Prostate mRNA"
- ],
- [
- "Putamen mRNA",
- "Putamen mRNA"
- ],
- [
- "Skin - Not Sun Exposed (Suprapubic) mRNA",
- "Skin - Not Sun Exposed (Suprapubic) mRNA"
- ],
- [
- "Skin - Sun Exposed (Lower leg) mRNA",
- "Skin - Sun Exposed (Lower leg) mRNA"
- ],
- [
- "Spinal Cord mRNA",
- "Spinal Cord mRNA"
- ],
- [
- "Stomach mRNA",
- "Stomach mRNA"
- ],
- [
- "Substantia Nigra mRNA",
- "Substantia Nigra mRNA"
- ],
- [
- "Testis mRNA",
- "Testis mRNA"
- ],
- [
- "Thyroid mRNA",
- "Thyroid mRNA"
- ],
- [
- "Tibial mRNA",
- "Tibial mRNA"
- ],
- [
- "Uterus mRNA",
- "Uterus mRNA"
- ],
- [
- "Vagina mRNA",
- "Vagina mRNA"
- ],
- [
- "Whole Blood mRNA",
- "Whole Blood mRNA"
- ]
- ],
- "GTEx_v5": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Adipose Tissue, Subcutaneous mRNA",
- "Adipose Tissue, Subcutaneous mRNA"
- ],
- [
- "Adipose Tissue, Visceral mRNA",
- "Adipose Tissue, Visceral mRNA"
- ],
- [
- "Adrenal Gland mRNA",
- "Adrenal Gland mRNA"
- ],
- [
- "Amygdala mRNA",
- "Amygdala mRNA"
- ],
- [
- "Anterior Cingulate Cortex mRNA",
- "Anterior Cingulate Cortex mRNA"
- ],
- [
- "Aorta mRNA",
- "Aorta mRNA"
- ],
- [
- "Bladder mRNA",
- "Bladder mRNA"
- ],
- [
- "Bone Marrow mRNA",
- "Bone Marrow mRNA"
- ],
- [
- "Breast - Mammary Tissue mRNA",
- "Breast - Mammary Tissue mRNA"
- ],
- [
- "Caudate mRNA",
- "Caudate mRNA"
- ],
- [
- "Cells - EBV-Transformed Lymphocytes mRNA",
- "Cells - EBV-Transformed Lymphocytes mRNA"
- ],
- [
- "Cells - Transformed Fibroblasts mRNA",
- "Cells - Transformed Fibroblasts mRNA"
- ],
- [
- "Cerebellar Cortex mRNA",
- "Cerebellar Cortex mRNA"
- ],
- [
- "Cerebellar Hemisphere mRNA",
- "Cerebellar Hemisphere mRNA"
- ],
- [
- "Cerebellum mRNA",
- "Cerebellum mRNA"
- ],
- [
- "Cervix mRNA",
- "Cervix mRNA"
- ],
- [
- "Colon - Sigmoid mRNA",
- "Colon - Sigmoid mRNA"
- ],
- [
- "Colon - Transverse mRNA",
- "Colon - Transverse mRNA"
- ],
- [
- "Coronary mRNA",
- "Coronary mRNA"
- ],
- [
- "Esophagus - Gastroesophageal mRNA",
- "Esophagus - Gastroesophageal mRNA"
- ],
- [
- "Esophagus - Mucosa mRNA",
- "Esophagus - Mucosa mRNA"
- ],
- [
- "Esophagus - Muscularis mRNA",
- "Esophagus - Muscularis mRNA"
- ],
- [
- "Fallopian Tube mRNA",
- "Fallopian Tube mRNA"
- ],
- [
- "Frontal Cortex mRNA",
- "Frontal Cortex mRNA"
- ],
- [
- "Heart - Atrial Appendage mRNA",
- "Heart - Atrial Appendage mRNA"
- ],
- [
- "Heart - Left Ventricle mRNA",
- "Heart - Left Ventricle mRNA"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Hypothalamus mRNA",
- "Hypothalamus mRNA"
- ],
- [
- "Kidney mRNA",
- "Kidney mRNA"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ],
- [
- "Lung mRNA",
- "Lung mRNA"
- ],
- [
- "Muscle mRNA",
- "Muscle mRNA"
- ],
- [
- "Nerve - Tibial mRNA",
- "Nerve - Tibial mRNA"
- ],
- [
- "Nucleus Accumbens mRNA",
- "Nucleus Accumbens mRNA"
- ],
- [
- "Ovary mRNA",
- "Ovary mRNA"
- ],
- [
- "Pancreas mRNA",
- "Pancreas mRNA"
- ],
- [
- "Pituitary Gland mRNA",
- "Pituitary Gland mRNA"
- ],
- [
- "Prostate mRNA",
- "Prostate mRNA"
- ],
- [
- "Putamen mRNA",
- "Putamen mRNA"
- ],
- [
- "Salivary Gland mRNA",
- "Salivary Gland mRNA"
- ],
- [
- "Skin - Not Sun Exposed (Suprapubic) mRNA",
- "Skin - Not Sun Exposed (Suprapubic) mRNA"
- ],
- [
- "Skin - Sun Exposed (Lower leg) mRNA",
- "Skin - Sun Exposed (Lower leg) mRNA"
- ],
- [
- "Small Intestine - Terminal Ileum mRNA",
- "Small Intestine - Terminal Ileum mRNA"
- ],
- [
- "Spinal Cord mRNA",
- "Spinal Cord mRNA"
- ],
- [
- "Spleen mRNA",
- "Spleen mRNA"
- ],
- [
- "Stomach mRNA",
- "Stomach mRNA"
- ],
- [
- "Substantia Nigra mRNA",
- "Substantia Nigra mRNA"
- ],
- [
- "Testis mRNA",
- "Testis mRNA"
- ],
- [
- "Thyroid mRNA",
- "Thyroid mRNA"
- ],
- [
- "Tibial mRNA",
- "Tibial mRNA"
- ],
- [
- "Uterus mRNA",
- "Uterus mRNA"
- ],
- [
- "Vagina mRNA",
- "Vagina mRNA"
- ],
- [
- "Whole Blood mRNA",
- "Whole Blood mRNA"
- ]
- ],
- "GTEx_v8": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Adipose Tissue, Subcutaneous mRNA",
- "Adipose Tissue, Subcutaneous mRNA"
- ],
- [
- "Adipose Tissue, Visceral mRNA",
- "Adipose Tissue, Visceral mRNA"
- ],
- [
- "Adrenal Gland mRNA",
- "Adrenal Gland mRNA"
- ],
- [
- "Amygdala mRNA",
- "Amygdala mRNA"
- ],
- [
- "Anterior Cingulate Cortex mRNA",
- "Anterior Cingulate Cortex mRNA"
- ],
- [
- "Aorta mRNA",
- "Aorta mRNA"
- ],
- [
- "Breast - Mammary Tissue mRNA",
- "Breast - Mammary Tissue mRNA"
- ],
- [
- "Caudate mRNA",
- "Caudate mRNA"
- ],
- [
- "Cells - EBV-Transformed Lymphocytes mRNA",
- "Cells - EBV-Transformed Lymphocytes mRNA"
- ],
- [
- "Cells - Transformed Fibroblasts mRNA",
- "Cells - Transformed Fibroblasts mRNA"
- ],
- [
- "Cerebellar Cortex mRNA",
- "Cerebellar Cortex mRNA"
- ],
- [
- "Cerebellar Hemisphere mRNA",
- "Cerebellar Hemisphere mRNA"
- ],
- [
- "Cerebellum mRNA",
- "Cerebellum mRNA"
- ],
- [
- "Colon - Sigmoid mRNA",
- "Colon - Sigmoid mRNA"
- ],
- [
- "Colon - Transverse mRNA",
- "Colon - Transverse mRNA"
- ],
- [
- "Coronary mRNA",
- "Coronary mRNA"
- ],
- [
- "Esophagus - Gastroesophageal mRNA",
- "Esophagus - Gastroesophageal mRNA"
- ],
- [
- "Esophagus - Mucosa mRNA",
- "Esophagus - Mucosa mRNA"
- ],
- [
- "Esophagus - Muscularis mRNA",
- "Esophagus - Muscularis mRNA"
- ],
- [
- "Frontal Cortex mRNA",
- "Frontal Cortex mRNA"
- ],
- [
- "Heart - Atrial Appendage mRNA",
- "Heart - Atrial Appendage mRNA"
- ],
- [
- "Heart - Left Ventricle mRNA",
- "Heart - Left Ventricle mRNA"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Hypothalamus mRNA",
- "Hypothalamus mRNA"
- ],
- [
- "Kidney mRNA",
- "Kidney mRNA"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ],
- [
- "Lung mRNA",
- "Lung mRNA"
- ],
- [
- "Muscle mRNA",
- "Muscle mRNA"
- ],
- [
- "Nerve - Tibial mRNA",
- "Nerve - Tibial mRNA"
- ],
- [
- "Nucleus Accumbens mRNA",
- "Nucleus Accumbens mRNA"
- ],
- [
- "Ovary mRNA",
- "Ovary mRNA"
- ],
- [
- "Pancreas mRNA",
- "Pancreas mRNA"
- ],
- [
- "Pituitary Gland mRNA",
- "Pituitary Gland mRNA"
- ],
- [
- "Prostate mRNA",
- "Prostate mRNA"
- ],
- [
- "Putamen mRNA",
- "Putamen mRNA"
- ],
- [
- "Salivary Gland mRNA",
- "Salivary Gland mRNA"
- ],
- [
- "Skin - Not Sun Exposed (Suprapubic) mRNA",
- "Skin - Not Sun Exposed (Suprapubic) mRNA"
- ],
- [
- "Skin - Sun Exposed (Lower leg) mRNA",
- "Skin - Sun Exposed (Lower leg) mRNA"
- ],
- [
- "Small Intestine - Terminal Ileum mRNA",
- "Small Intestine - Terminal Ileum mRNA"
- ],
- [
- "Spinal Cord mRNA",
- "Spinal Cord mRNA"
- ],
- [
- "Spleen mRNA",
- "Spleen mRNA"
- ],
- [
- "Stomach mRNA",
- "Stomach mRNA"
- ],
- [
- "Substantia Nigra mRNA",
- "Substantia Nigra mRNA"
- ],
- [
- "Testis mRNA",
- "Testis mRNA"
- ],
- [
- "Thyroid mRNA",
- "Thyroid mRNA"
- ],
- [
- "Tibial mRNA",
- "Tibial mRNA"
- ],
- [
- "Uterus mRNA",
- "Uterus mRNA"
- ],
- [
- "Vagina mRNA",
- "Vagina mRNA"
- ],
- [
- "Whole Blood mRNA",
- "Whole Blood mRNA"
- ]
- ],
- "HB": [
- [
- "Cerebellum mRNA",
- "Cerebellum mRNA"
- ],
- [
- "Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
- ],
- [
- "Primary Visual Cortex mRNA",
- "Primary Visual Cortex mRNA"
- ]
- ],
- "HCP": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ],
- "HLC": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ]
- ],
- "HLT": [
- [
- "Lung mRNA",
- "Lung mRNA"
- ]
- ],
- "HSB": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Amygdala mRNA",
- "Amygdala mRNA"
- ],
- [
- "Cerebellar Cortex mRNA",
- "Cerebellar Cortex mRNA"
- ],
- [
- "Dorsolateral Prefrontal Cortex mRNA",
- "Dorsolateral Prefrontal Cortex mRNA"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Inferior Temporal Cortex mRNA",
- "Inferior Temporal Cortex mRNA"
- ],
- [
- "Medial Prefrontal Cortex mRNA",
- "Medial Prefrontal Cortex mRNA"
- ],
- [
- "Mediodorsal Nucleus of Thalamus mRNA",
- "Mediodorsal Nucleus of Thalamus mRNA"
- ],
- [
- "Orbital Prefrontal Cortex mRNA",
- "Orbital Prefrontal Cortex mRNA"
- ],
- [
- "Posterior Inferior Parietal Cortex mRNA",
- "Posterior Inferior Parietal Cortex mRNA"
- ],
- [
- "Posterior Superior Temporal Cortex mRNA",
- "Posterior Superior Temporal Cortex mRNA"
- ],
- [
- "Primary Auditory (A1) Cortex mRNA",
- "Primary Auditory (A1) Cortex mRNA"
- ],
- [
- "Primary Motor (M1) Cortex mRNA",
- "Primary Motor (M1) Cortex mRNA"
- ],
- [
- "Primary Somatosensory (S1) Cortex mRNA",
- "Primary Somatosensory (S1) Cortex mRNA"
- ],
- [
- "Primary Visual Cortex mRNA",
- "Primary Visual Cortex mRNA"
- ],
- [
- "Striatum mRNA",
- "Striatum mRNA"
- ],
- [
- "Ventrolateral Prefrontal Cortex mRNA",
- "Ventrolateral Prefrontal Cortex mRNA"
- ]
- ],
- "Islets-Gerling": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Islets mRNA",
- "Islets mRNA"
- ]
- ],
- "TIGEM-Retina-RNA-Seq": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Retina mRNA",
- "Retina mRNA"
- ]
- ]
- },
- "macaque monkey": {
- "Macaca-fasicularis": [
- [
- "Amygdala mRNA",
- "Amygdala mRNA"
- ],
- [
- "Brain mRNA",
- "Brain mRNA"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Nucleus Accumbens mRNA",
- "Nucleus Accumbens mRNA"
- ],
- [
- "Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
- ]
- ]
- },
- "mouse": {
- "AKXD": [
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Mammary Tumors mRNA",
- "Mammary Tumors mRNA"
- ]
- ],
- "AXBXA": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Bone Femur mRNA",
- "Bone Femur mRNA"
- ],
- [
- "Eye mRNA",
- "Eye mRNA"
- ],
- [
- "Heart mRNA",
- "Heart mRNA"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ]
- ],
- "B6-Lens": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Ocular Lens mRNA",
- "Ocular Lens mRNA"
- ]
- ],
- "B6BTBRF2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ]
- ],
- "B6D2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Retina microRNA",
- "Retina microRNA"
- ],
- [
- "Retina mRNA",
- "Retina mRNA"
- ]
- ],
- "B6D2F2": [
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Brain mRNA",
- "Brain mRNA"
- ]
- ],
- "B6D2F2-PSU": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Muscle mRNA",
- "Muscle mRNA"
- ]
- ],
- "B6D2RI": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ]
- ],
- "BDF2-1999": [
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ]
- ],
- "BDF2-2005": [
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Striatum mRNA",
- "Striatum mRNA"
- ]
- ],
- "BHF2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Adipose mRNA",
- "Adipose mRNA"
- ],
- [
- "Brain mRNA",
- "Brain mRNA"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ],
- [
- "Muscle mRNA",
- "Muscle mRNA"
- ]
- ],
- "BHHBF2": [
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Adipose mRNA",
- "Adipose mRNA"
- ],
- [
- "Brain mRNA",
- "Brain mRNA"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ],
- [
- "Muscle mRNA",
- "Muscle mRNA"
- ]
- ],
- "BXD": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Adipose mRNA",
- "Adipose mRNA"
- ],
- [
- "Adipose Proteome",
- "Adipose Proteome"
- ],
- [
- "Adrenal Gland mRNA",
- "Adrenal Gland mRNA"
- ],
- [
- "Amygdala mRNA",
- "Amygdala mRNA"
- ],
- [
- "Bone Femur mRNA",
- "Bone Femur mRNA"
- ],
- [
- "Brain mRNA",
- "Brain mRNA"
- ],
- [
- "Cartilage mRNA",
- "Cartilage mRNA"
- ],
- [
- "Cerebellum mRNA",
- "Cerebellum mRNA"
- ],
- [
- "Eye mRNA",
- "Eye mRNA"
- ],
- [
- "Fecal Metabolome",
- "Fecal Metabolome"
- ],
- [
- "Gastrointestinal mRNA",
- "Gastrointestinal mRNA"
- ],
- [
- "Heart mRNA",
- "Heart mRNA"
- ],
- [
- "Hematopoietic Cells mRNA",
- "Hematopoietic Cells mRNA"
- ],
- [
- "Hippocampal Precursor Cells mRNA",
- "Hippocampal Precursor Cells mRNA"
- ],
- [
- "Hippocampus microRNA",
- "Hippocampus microRNA"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Hypothalamus mRNA",
- "Hypothalamus mRNA"
- ],
- [
- "Kidney mRNA",
- "Kidney mRNA"
- ],
- [
- "Leucocytes mRNA",
- "Leucocytes mRNA"
- ],
- [
- "Liver DNAm",
- "Liver DNAm"
- ],
- [
- "Liver Metabolome",
- "Liver Metabolome"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ],
- [
- "Liver Proteome",
- "Liver Proteome"
- ],
- [
- "Lung mRNA",
- "Lung mRNA"
- ],
- [
- "Midbrain mRNA",
- "Midbrain mRNA"
- ],
- [
- "Muscle Metabolome",
- "Muscle Metabolome"
- ],
- [
- "Muscle mRNA",
- "Muscle mRNA"
- ],
- [
- "Neocortex mRNA",
- "Neocortex mRNA"
- ],
- [
- "Neutrophils mRNA",
- "Neutrophils mRNA"
- ],
- [
- "Nucleus Accumbens mRNA",
- "Nucleus Accumbens mRNA"
- ],
- [
- "Pituitary Gland mRNA",
- "Pituitary Gland mRNA"
- ],
- [
- "Popliteal Lymph Node mRNA",
- "Popliteal Lymph Node mRNA"
- ],
- [
- "Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
- ],
- [
- "Retina mRNA",
- "Retina mRNA"
- ],
- [
- "Spleen mRNA",
- "Spleen mRNA"
- ],
- [
- "Striatum mRNA",
- "Striatum mRNA"
- ],
- [
- "T Cell (helper) mRNA",
- "T Cell (helper) mRNA"
- ],
- [
- "T Cell (regulatory) mRNA",
- "T Cell (regulatory) mRNA"
- ],
- [
- "Thymus mRNA",
- "Thymus mRNA"
- ],
- [
- "Ventral Tegmental Area mRNA",
- "Ventral Tegmental Area mRNA"
- ]
- ],
- "BXD-Bone": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ],
- "BXD-Harvested": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Hippocampus Proteome",
- "Hippocampus Proteome"
- ],
- [
- "Liver DNAm",
- "Liver DNAm"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ],
- [
- "Liver Proteome",
- "Liver Proteome"
- ]
- ],
- "BXD300": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ]
- ],
- "BXH": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Bone Femur mRNA",
- "Bone Femur mRNA"
- ],
- [
- "Cartilage mRNA",
- "Cartilage mRNA"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ]
- ],
- "C57BL-6JxC57BL-6NJF2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ],
- "CC": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Midbrain mRNA",
- "Midbrain mRNA"
- ]
- ],
- "CFW": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
- ],
- [
- "Striatum mRNA",
- "Striatum mRNA"
- ]
- ],
- "CIE-INIA": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "LCM Brain Regions mRNA",
- "LCM Brain Regions mRNA"
- ]
- ],
- "CIE-RMA": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Midbrain mRNA",
- "Midbrain mRNA"
- ],
- [
- "Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
- ],
- [
- "Striatum mRNA",
- "Striatum mRNA"
- ]
- ],
- "CMS": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ]
- ],
- "CTB6F2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Adipose mRNA",
- "Adipose mRNA"
- ],
- [
- "Brain mRNA",
- "Brain mRNA"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ],
- [
- "Muscle mRNA",
- "Muscle mRNA"
- ]
- ],
- "CXB": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Heart mRNA",
- "Heart mRNA"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ],
- [
- "Spleen mRNA",
- "Spleen mRNA"
- ]
- ],
- "D2GM": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Retina mRNA",
- "Retina mRNA"
- ]
- ],
- "DOD-BXD-GWI": [
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
- ]
- ],
- "EMSR": [
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ]
- ],
- "HET3-ITP": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ],
- "HS": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ],
- [
- "Lung mRNA",
- "Lung mRNA"
- ]
- ],
- "HS-CC": [
- [
- "Striatum mRNA",
- "Striatum mRNA"
- ]
- ],
- "JAX-D2-Mono-RNA-Seq": [
- [
- "Retina mRNA",
- "Retina mRNA"
- ]
- ],
- "LGSM-AI": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
- ],
- [
- "Striatum mRNA",
- "Striatum mRNA"
- ]
- ],
- "LGSM-AI-G34-A": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ],
- "LGSM-AI-G34-GBS": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ],
- "LGSM-AI-G34_39-43-GBS": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ],
- "LGSM-AI-G39-43-GBS": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ],
- "LGSM-AIG34_50-56-GBS": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ],
- "LXS": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Brain mRNA",
- "Brain mRNA"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
- ]
- ],
- "Linsenbardt-Boehm": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ],
- "MDP": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Bone Femur mRNA",
- "Bone Femur mRNA"
- ],
- [
- "Dorsal Root Ganglia mRNA",
- "Dorsal Root Ganglia mRNA"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ],
- [
- "Spleen mRNA",
- "Spleen mRNA"
- ]
- ],
- "NZBXFVB-N2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Mammary Tumors mRNA",
- "Mammary Tumors mRNA"
- ]
- ],
- "Retina-RGC-Rheaume": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Retina Single-cell RNA-Seq",
- "Retina Single-cell RNA-Seq"
- ]
- ],
- "SOTNOT-OHSU": [
- [
- "Genotypes",
- "Genotypes"
- ]
- ],
- "Scripps-2013": [
- [
- "Anterior Cingulate Cortex mRNA",
- "Anterior Cingulate Cortex mRNA"
- ]
- ],
- "UTHSC-Cannabinoid": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ]
- },
- "poplar": {
- "Poplar": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ]
- },
- "rat": {
- "HSNIH-Palmer": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Infralimbic Cortex mRNA",
- "Infralimbic Cortex mRNA"
- ],
- [
- "Lateral Habenula mRNA",
- "Lateral Habenula mRNA"
- ],
- [
- "Nucleus Accumbens mRNA",
- "Nucleus Accumbens mRNA"
- ],
- [
- "Orbitofrontal Cortex mRNA",
- "Orbitofrontal Cortex mRNA"
- ],
- [
- "Prelimbic Cortex mRNA",
- "Prelimbic Cortex mRNA"
- ]
- ],
- "HSNIH-RGSMC": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ],
- "HXBBXH": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Adipose mRNA",
- "Adipose mRNA"
- ],
- [
- "Adrenal Gland mRNA",
- "Adrenal Gland mRNA"
- ],
- [
- "Heart mRNA",
- "Heart mRNA"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Kidney mRNA",
- "Kidney mRNA"
- ],
- [
- "Liver mRNA",
- "Liver mRNA"
- ],
- [
- "Peritoneal Fat mRNA",
- "Peritoneal Fat mRNA"
- ]
- ],
- "SRxSHRSPF2": [
- [
- "Eye mRNA",
- "Eye mRNA"
- ]
- ]
- },
- "soybean": {
- "J12XJ58F11": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ],
- "J12XJ58F2": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ]
- },
- "tomato": {
- "LXP": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ]
- }
- }
-}
diff --git a/wqflask/wqflask/templates/base.html b/wqflask/wqflask/templates/base.html
index f9d4e859..07c1b48e 100644
--- a/wqflask/wqflask/templates/base.html
+++ b/wqflask/wqflask/templates/base.html
@@ -72,6 +72,7 @@
<li><a href="httP://datafiles.genenetwork.org">Interplanetary File System</a></li>
</ul>
</li>
+ {% if g.user_session %}
<li class="">
<a href="/collections/list">Collections
<span class="badge badge-info">{{ g.user_session.num_collections }}</span>
@@ -93,6 +94,7 @@
<a id="login_in" href="/n/login">Sign in</a>
{% endif %}
</li>
+ {% endif %}
<!--
<li style="margin-left: 20px;">
<a href="http://gn2-staging.genenetwork.org" style="font-weight: bold;" >Use Staging Branch</a>
diff --git a/wqflask/wqflask/user_manager.py b/wqflask/wqflask/user_manager.py
index 4dc3e18c..a871e91a 100644
--- a/wqflask/wqflask/user_manager.py
+++ b/wqflask/wqflask/user_manager.py
@@ -350,8 +350,9 @@ class UserSession(object):
Redis.delete(self.cookie_name)
logger.debug("At end of delete_session")
-#@app.before_request
-def before_request():
+@app.before_request
+def get_cookie():
+ logger.info("@app.before_request get cookie")
g.user_session = UserSession()
g.cookie_session = AnonUser()
diff --git a/wqflask/wqflask/user_session.py b/wqflask/wqflask/user_session.py
index fd1779fb..4c2305ba 100644
--- a/wqflask/wqflask/user_session.py
+++ b/wqflask/wqflask/user_session.py
@@ -25,6 +25,19 @@ logger = getLogger(__name__)
THREE_DAYS = 60 * 60 * 24 * 3
THIRTY_DAYS = 60 * 60 * 24 * 30
+@app.before_request
+def get_user_session():
+ logger.info("@app.before_request get_session")
+ g.user_session = UserSession()
+
+@app.after_request
+def set_user_session(response):
+ if hasattr(g, 'user_session'):
+ if not request.cookies.get(g.user_session.cookie_name):
+ response.set_cookie(g.user_session.cookie_name, g.user_session.cookie)
+ return response
+
+
def verify_cookie(cookie):
the_uuid, separator, the_signature = cookie.partition(':')
assert len(the_uuid) == 36, "Is session_id a uuid?"
@@ -280,12 +293,4 @@ class UserSession(object):
Redis.delete(self.redis_key)
self.logged_in = False
-@app.before_request
-def before_request():
- g.user_session = UserSession()
-@app.after_request
-def set_cookie(response):
- if not request.cookies.get(g.user_session.cookie_name):
- response.set_cookie(g.user_session.cookie_name, g.user_session.cookie)
- return response \ No newline at end of file
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index 7d3dfa48..44752246 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -80,6 +80,7 @@ logger = utility.logger.getLogger(__name__ )
@app.before_request
def connect_db():
+ logger.info("@app.before_request connect_db")
db = getattr(g, '_database', None)
if db is None:
logger.debug("Get new database connector")
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-21 23:52:36 +0000