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| author | zsloan | 2019-12-05 14:37:09 -0600 |
|---|---|---|
| committer | zsloan | 2019-12-05 14:37:09 -0600 |
| commit | 90451d426124362dfd8ada807b15c733c718eb21 (patch) | |
| tree | a83cf74711f2112d5904bfe69ddf2984fbc28e42 | |
| parent | c2bfeab32d50cef99f1fb7984ed1432c2b2e7a54 (diff) | |
| download | genenetwork2-90451d426124362dfd8ada807b15c733c718eb21.tar.gz | |
Fixed issue that caused Y chromosome and mitochondrial markers to cause an error
| -rw-r--r-- | wqflask/wqflask/marker_regression/gemma_mapping.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/gemma_mapping.py b/wqflask/wqflask/marker_regression/gemma_mapping.py index 5b34e837..3d3f26f3 100644 --- a/wqflask/wqflask/marker_regression/gemma_mapping.py +++ b/wqflask/wqflask/marker_regression/gemma_mapping.py @@ -214,7 +214,7 @@ def parse_loco_output(this_dataset, gwa_output_filename): else: marker = {} marker['name'] = line.split("\t")[1] - if line.split("\t")[0] != "X" and line.split("\t")[0] != "X/Y": + if line.split("\t")[0] != "X" and line.split("\t")[0] != "X/Y" and line.split("\t")[0] != "Y" and line.split("\t")[0] != "M": if "chr" in line.split("\t")[0]: marker['chr'] = int(line.split("\t")[0][3:]) else: |