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authorzsloan2015-06-02 21:23:05 +0000
committerzsloan2015-06-02 21:23:05 +0000
commita3cea36d16ec20a6fb5b4e9073e34b2adff0c3dd (patch)
tree7e19ba4bf7af1dc5f97980c638d9b4bbb16c6ef3
parente0b9c2039a1d8dc804c5a3b537021b24cf371b44 (diff)
downloadgenenetwork2-a3cea36d16ec20a6fb5b4e9073e34b2adff0c3dd.tar.gz
Added Panduka's Genotation tool link to the trait page, along with the Gene, OMIM, and GenBank links
-rwxr-xr-xwqflask/wqflask/templates/show_trait_details.html27
1 files changed, 27 insertions, 0 deletions
diff --git a/wqflask/wqflask/templates/show_trait_details.html b/wqflask/wqflask/templates/show_trait_details.html
index e1780e42..ffedbd5f 100755
--- a/wqflask/wqflask/templates/show_trait_details.html
+++ b/wqflask/wqflask/templates/show_trait_details.html
@@ -29,6 +29,33 @@
<dt>BLAT Score</dt>
<dd>{{ "%0.3f" | format(this_trait.probe_set_blat_score|float) }}</dd>
{% endif %}
+ <dt>Resource Links</dt>
+ {% if this_trait.dataset.type == 'ProbeSet' %}
+ <dd>
+ <a href="http://bioinformatics-dev/Getd2g.pl?gene_list={{ this_trait.symbol }}" target="_blank" title="Related descriptive, genomic, clinical, functional and drug-therapy information">
+ Genotation
+ </a>
+ &nbsp;&nbsp;
+ {% if this_trait.geneid != None %}
+ <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=Graphics&list_uids={{ this_trait.geneid }}" target="_blank" title="Info from NCBI Entrez Gene">
+ Gene
+ </a>
+ &nbsp;&nbsp;
+ {% endif %}
+ {% if this_trait.omim != None %}
+ <a href="http://www.ncbi.nlm.nih.gov/omim/{{ this_trait.omim }}" target="_blank" title="Summary from On Mendelion Inheritance in Man">
+ OMIM
+ </a>
+ &nbsp;&nbsp;
+ {% endif %}
+ {% if this_trait.genbankid != None %}
+ <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Nucleotide&cmd=search&doptcmdl=DocSum&term={{ this_trait.genbankid }}" target="_blank" title="Find the original GenBank sequence used to design the probes">
+ GenBank
+ </a>
+ &nbsp;&nbsp;
+ {% endif %}
+ </dd>
+ {% endif %}
</dl>