diff options
author | zsloan | 2020-01-22 14:46:49 -0600 |
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committer | zsloan | 2020-01-22 14:46:49 -0600 |
commit | 9079631e2eb431b4fdd87b4b0249483d3e01df97 (patch) | |
tree | ea25d286caee6922010cfe7b27591cb4623fe595 | |
parent | 26b3b191f12b6265b62a623d9c5675cffb369247 (diff) | |
download | genenetwork2-9079631e2eb431b4fdd87b4b0249483d3e01df97.tar.gz |
Switched user authentication code to using Redis instead of ElasticSearch
-rw-r--r-- | wqflask/wqflask/templates/new_security/login_user.html | 14 | ||||
-rw-r--r-- | wqflask/wqflask/user_manager.py | 167 |
2 files changed, 55 insertions, 126 deletions
diff --git a/wqflask/wqflask/templates/new_security/login_user.html b/wqflask/wqflask/templates/new_security/login_user.html index c9aaf028..9df0e16a 100644 --- a/wqflask/wqflask/templates/new_security/login_user.html +++ b/wqflask/wqflask/templates/new_security/login_user.html @@ -8,7 +8,7 @@ <h4>Already have an account? Sign in here.</h4> - {% if es_server: %} + {% if redis_is_available: %} <form class="form-horizontal" action="/n/login" method="POST" name="login_user_form" id="loginUserForm"> <fieldset> <div class="form-group"> @@ -48,9 +48,9 @@ <h4>Don't have an account?</h4> - {% if es_server: %} + {% if redis_is_available: %} <a href="/n/register" class="btn btn-primary modalize">Create a new account</a> - {% else: %} + {% else %} <div class="alert alert-warning"> <p>You cannot create an account at this moment.<br /> Please try again later.</p> @@ -81,15 +81,15 @@ {% endif %} </form> - {% else: %} + {% else: %} <div class="alert alert-warning"> <p>You cannot login at this moment using your GeneNetwork account (the authentication service is down).<br /> Please try again later.</p> - </div> + </div> {% endif %} - {% if not es_server and not external_login: %} + {% if not external_login: %} <hr> - <div class="alert alert-warning"> + <div class="alert alert-warning"> Note: it is safe to use GeneNetwork without a login. Login is only required for keeping track of collections and getting access to some types of restricted data. </div> diff --git a/wqflask/wqflask/user_manager.py b/wqflask/wqflask/user_manager.py index bf403536..1b27d7cb 100644 --- a/wqflask/wqflask/user_manager.py +++ b/wqflask/wqflask/user_manager.py @@ -36,7 +36,8 @@ logger = getLogger(__name__) from base.data_set import create_datasets_list import requests -from utility.elasticsearch_tools import get_elasticsearch_connection, get_user_by_unique_column, get_item_by_unique_column, save_user, es_save_data + +from utility.redis_tools import get_user_id, get_user_by_unique_column, set_user_attribute, save_user, save_verification_code, check_verification_code, get_user_collections, save_collections from smtplib import SMTP from utility.tools import SMTP_CONNECT, SMTP_USERNAME, SMTP_PASSWORD, LOG_SQL_ALCHEMY @@ -197,19 +198,14 @@ class UserSession(object): return '' @property - def es_user_id(self): + def redis_user_id(self): """User id from ElasticSearch (need to check if this is the same as the id stored in self.records)""" - es = get_elasticsearch_connection() user_email = self.record['user_email_address'] #ZS: Get user's collections if they exist - response = es.search( - index = "users", doc_type = "local", body = { - "query": { "match": { "email_address": user_email } } - }) - - user_id = response['hits']['hits'][0]['_id'] + user_id = None + user_id = get_user_id("email_address", user_email) return user_id @property @@ -224,49 +220,15 @@ class UserSession(object): def user_collections(self): """List of user's collections""" - es = get_elasticsearch_connection() - - user_email = self.record['user_email_address'] - #ZS: Get user's collections if they exist - response = es.search( - index = "users", doc_type = "local", body = { - "query": { "match": { "email_address": user_email } } - }) - user_info = response['hits']['hits'][0]['_source'] - if 'collections' in user_info.keys(): - if len(user_info['collections']) > 0: - collection_list = json.loads(user_info['collections']) - return sorted(collection_list, key = lambda i: datetime.datetime.strptime(i['changed_timestamp'], '%b %d %Y %I:%M%p'), reverse=True) - else: - return [] - else: - return [] + collections = get_user_collections(self.redis_user_id) + return collections @property def num_collections(self): """Number of user's collections""" - es = get_elasticsearch_connection() - - user_email = self.record['user_email_address'] - - #ZS: Get user's collections if they exist - response = es.search( - index = "users", doc_type = "local", body = { - "query": { "match": { "email_address": user_email } } - }) - - user_info = response['hits']['hits'][0]['_source'] - logger.debug("USER NUM COLL:", user_info) - if 'collections' in user_info.keys(): - if user_info['collections'] != "[]" and len(user_info['collections']) > 0: - collections_json = json.loads(user_info['collections']) - return len(collections_json) - else: - return 0 - else: - return 0 + return len(self.user_collections) ### # ZS: This is currently not used, but I'm leaving it here commented out because the old "set superuser" code (at the bottom of this file) used it @@ -297,29 +259,9 @@ class UserSession(object): 'num_members': len(traits), 'members': list(traits) } - es = get_elasticsearch_connection() - - user_email = self.record['user_email_address'] - response = es.search( - index = "users", doc_type = "local", body = { - "query": { "match": { "email_address": user_email } } - }) - - user_id = response['hits']['hits'][0]['_id'] - user_info = response['hits']['hits'][0]['_source'] - - if 'collections' in user_info.keys(): - if user_info['collections'] != [] and user_info['collections'] != "[]": - current_collections = json.loads(user_info['collections']) - current_collections.append(collection_dict) - self.update_collections(current_collections) - #collections_json = json.dumps(current_collections) - else: - self.update_collections([collection_dict]) - #collections_json = json.dumps([collection_dict]) - else: - self.update_collections([collection_dict]) - #collections_json = json.dumps([collection_dict]) + current_collections = self.user_collections + current_collections.append(collection_dict) + self.update_collections(current_collections) return collection_dict['id'] @@ -399,10 +341,9 @@ class UserSession(object): return None def update_collections(self, updated_collections): - es = get_elasticsearch_connection() + collection_body = json.dumps(updated_collections) - collection_body = {'doc': {'collections': json.dumps(updated_collections)}} - es.update(index='users', doc_type='local', id=self.es_user_id, refresh='wait_for', body=collection_body) + save_collections(self.redis_user_id, collection_body) def delete_session(self): # And more importantly delete the redis record @@ -449,16 +390,13 @@ class RegisterUser(object): self.thank_you_mode = False self.errors = [] self.user = Bunch() - es = kw.get('es_connection', None) - - if not es: - self.errors.append("Missing connection object") self.user.email_address = kw.get('email_address', '').encode("utf-8").strip() if not (5 <= len(self.user.email_address) <= 50): self.errors.append('Email Address needs to be between 5 and 50 characters.') else: - email_exists = get_user_by_unique_column(es, "email_address", self.user.email_address) + email_exists = get_user_by_unique_column("email_address", self.user.email_address) + #email_exists = get_user_by_unique_column(es, "email_address", self.user.email_address) if email_exists: self.errors.append('User already exists with that email') @@ -487,7 +425,7 @@ class RegisterUser(object): self.user.confirmed = 1 self.user.registration_info = json.dumps(basic_info(), sort_keys=True) - save_user(es, self.user.__dict__, self.user.user_id) + save_user(self.user.__dict__, self.user.user_id) def set_password(password, user): pwfields = Bunch() @@ -563,8 +501,9 @@ class ForgotPasswordEmail(VerificationEmail): "email_address": toaddr, "timestamp": timestamp() } - es = get_elasticsearch_connection() - es_save_data(es, self.key_prefix, "local", data, verification_code) + + save_verification_code(toaddr, verification_code) + subject = self.subject body = render_template( @@ -621,19 +560,11 @@ def password_reset(): # user_encode = DecodeUser(ForgotPasswordEmail.key_prefix).reencode_standalone() verification_code = request.args.get('code') hmac = request.args.get('hm') - es = get_elasticsearch_connection() + if verification_code: - code_details = get_item_by_unique_column( - es - , "verification_code" - , verification_code - , ForgotPasswordEmail.key_prefix - , "local") - if code_details: - user_details = get_user_by_unique_column( - es - , "email_address" - , code_details["email_address"]) + user_email = check_verification_code(verification_code) + if user_email: + user_details = get_user_by_unique_column('email_address', user_email) if user_details: return render_template( "new_security/password_reset.html", user_encode=user_details["user_id"]) @@ -641,7 +572,8 @@ def password_reset(): flash("Invalid code: User no longer exists!", "error") else: flash("Invalid code: Password reset code does not exist or might have expired!", "error") - return redirect(url_for("login"))#render_template("new_security/login_user.html", error=error) + else: + return redirect(url_for("login")) @app.route("/n/password_reset_step2", methods=('POST',)) def password_reset_step2(): @@ -658,16 +590,7 @@ def password_reset_step2(): password = request.form['password'] set_password(password, user) - es = get_elasticsearch_connection() - es.update( - index = "users" - , doc_type = "local" - , id = user_id - , body = { - "doc": { - "password": user.__dict__.get("password") - } - }) + set_user_attribute(user_id, "password", user.__dict__.get("password")) flash("Password changed successfully. You can now sign in.", "alert-info") response = make_response(redirect(url_for('login'))) @@ -719,8 +642,8 @@ def github_oauth2(): result_dict = {arr[0]:arr[1] for arr in [tok.split("=") for tok in [token.encode("utf-8") for token in result.text.split("&")]]} github_user = get_github_user_details(result_dict["access_token"]) - es = get_elasticsearch_connection() - user_details = get_user_by_unique_column(es, "github_id", github_user["id"]) + + user_details = get_user_by_unique_column("github_id", github_user["id"]) if user_details == None: user_details = { "user_id": str(uuid.uuid4()) @@ -732,7 +655,8 @@ def github_oauth2(): , "active": 1 , "confirmed": 1 } - save_user(es, user_details, user_details["user_id"]) + save_user(user_details, user_details["user_id"]) + url = "/n/login?type=github&uid="+user_details["user_id"] return redirect(url) @@ -753,8 +677,7 @@ def orcid_oauth2(): result = requests.post(ORCID_TOKEN_URL, data=data) result_dict = json.loads(result.text.encode("utf-8")) - es = get_elasticsearch_connection() - user_details = get_user_by_unique_column(es, "orcid", result_dict["orcid"]) + user_details = get_user_by_unique_column("orcid", result_dict["orcid"]) if user_details == None: user_details = { "user_id": str(uuid4()) @@ -768,7 +691,8 @@ def orcid_oauth2(): , "active": 1 , "confirmed": 1 } - save_user(es, user_details, user_details["user_id"]) + save_user(user_details, user_details["user_id"]) + url = "/n/login?type=orcid&uid="+user_details["user_id"] else: flash("There was an error getting code from ORCID") @@ -788,8 +712,8 @@ class LoginUser(object): def oauth2_login(self, login_type, user_id): """Login via an OAuth2 provider""" - es = get_elasticsearch_connection() - user_details = get_user_by_unique_column(es, "user_id", user_id) + + user_details = get_user_by_unique_column("user_id", user_id) if user_details: user = model.User() user.id = user_details["user_id"] if user_details["user_id"] == None else "N/A" @@ -804,7 +728,7 @@ class LoginUser(object): """Login through the normal form""" params = request.form if request.form else request.args logger.debug("in login params are:", params) - es = get_elasticsearch_connection() + if not params: from utility.tools import GITHUB_AUTH_URL, GITHUB_CLIENT_ID, ORCID_AUTH_URL, ORCID_CLIENT_ID external_login = {} @@ -812,13 +736,14 @@ class LoginUser(object): external_login["github"] = GITHUB_AUTH_URL if ORCID_AUTH_URL and ORCID_CLIENT_ID != 'UNKNOWN': external_login["orcid"] = ORCID_AUTH_URL - assert(es is not None) + return render_template( "new_security/login_user.html" , external_login=external_login - , es_server=es.ping()) + , redis_is_available = is_redis_available()) else: - user_details = get_user_by_unique_column(es, "email_address", params["email_address"]) + user_details = get_user_by_unique_column("email_address", params["email_address"]) + #user_details = get_user_by_unique_column(es, "email_address", params["email_address"]) user = None valid = None if user_details: @@ -942,8 +867,7 @@ def forgot_password_submit(): next_page = None if email_address != "": logger.debug("Wants to send password E-mail to ",email_address) - es = get_elasticsearch_connection() - user_details = get_user_by_unique_column(es, "email_address", email_address) + user_details = get_user_by_unique_column("email_address", email_address) if user_details: ForgotPasswordEmail(user_details["email_address"]) return render_template("new_security/forgot_password_step2.html", @@ -960,6 +884,13 @@ def forgot_password_submit(): def unauthorized(error): return redirect(url_for('login')) +def is_redis_available(): + try: + Redis.ping() + except: + return False + return True + ### # ZS: The following 6 functions require the old MySQL User accounts; I'm leaving them commented out just in case we decide to reimplement them using ElasticSearch ### @@ -1021,8 +952,6 @@ def register(): params = request.form if request.form else request.args params = params.to_dict(flat=True) - es = get_elasticsearch_connection() - params["es_connection"] = es if params: logger.debug("Attempting to register the user...") |