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| author | root | 2014-02-20 15:19:59 -0600 |
|---|---|---|
| committer | root | 2014-02-20 15:19:59 -0600 |
| commit | 153ec8f16c3d9ef936e244c568751788d1413a62 (patch) | |
| tree | 4d1b866e979458305b3c1553f5422fa851fdeead | |
| parent | 34cb91c7bb4f49156e60d3b67318834c10f8d0f0 (diff) | |
| download | genenetwork2-153ec8f16c3d9ef936e244c568751788d1413a62.tar.gz | |
Committer: root <root@alexandria.uthsc.edu>
On branch master
| -rw-r--r-- | wqflask/maintenance/dataset/load_phenotypes.py | 35 |
1 files changed, 34 insertions, 1 deletions
diff --git a/wqflask/maintenance/dataset/load_phenotypes.py b/wqflask/maintenance/dataset/load_phenotypes.py index 740fc9b5..44876d53 100644 --- a/wqflask/maintenance/dataset/load_phenotypes.py +++ b/wqflask/maintenance/dataset/load_phenotypes.py @@ -110,7 +110,40 @@ def main(argv): publicationid = con.insert_id() print "INSERT INTO Publication: %d record: %d" % (rowcount, publicationid) # data - + for index, strain in enumerate(strains): + # + strainid = strain[0] + value = utilities.to_db_float(datarow_value[index+1], None) + se = utilities.to_db_float(datarow_se[index+1], None) + n = utilities.to_db_int(datarow_n[index+1], None) + # + if value: + sql = """ + INSERT INTO PublishData + SET + PublishData.`Id`=%s, + PublishData.`StrainId`=%s, + PublishData.`value`=%s + """ + cursor.execute(sql, (dataid, strainid, value)) + if se: + sql = """ + INSERT INTO PublishSE + SET + PublishSE.`DataId`=%s, + PublishSE.`StrainId`=%s, + PublishSE.`error`=%s + """ + cursor.execute(sql, (dataid, strainid, se)) + if n: + sql = """ + INSERT INTO NStrain + SET + NStrain.`DataId`=%s, + NStrain.`StrainId`=%s, + NStrain.`count`=%s + """ + cursor.execute(sql, (dataid, strainid, n)) if __name__ == "__main__": print "command line arguments:\n\t%s" % sys.argv |