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authorzsloan2021-06-28 18:31:29 +0000
committerzsloan2021-06-28 18:31:29 +0000
commitd6937e74b85a4fc44153530520774836eed60fe6 (patch)
tree4e28cc310ab2d1904e91060310f2f6657589aa5d
parentda6ec3fb0666f20f7dd2f770c4e2c55ef017eb1b (diff)
downloadgenenetwork2-d6937e74b85a4fc44153530520774836eed60fe6.tar.gz
Added doc for creating guix profile, written by Bonface
-rw-r--r--doc/guix_profile_setup.org39
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+* Setting up GUIX profile for GN

+

+First create a guix profile with the latest packages:

+

+: ~/opt/guix/bin/guix pull

+

+This will create a profile with the latest packages under`~/.config/guix/current`

+

+Now you have the latest guix. Check: `$HOME/.config/guix/current/bin/guix --version`

+

+At this point, it's worth mentioning that installing

+python3-genenetwork using `$HOME/.config/guix/current/bin/guix` should

+work; but let's use the dev version(since that may come handy in

+time), and it's a nice thing to know.

+

+Next, we ensure that the appropriate GUILE<sub>PATHS</sub> are set:

+

+: export GUILE_LOAD_PATH=$HOME/.config/guix/current/share/guile/site/3.0/

+: export GUILE_LOAD_COMPILED_PATH=$HOME/.config/guix/current/lib/guile/3.0/site-ccache/ 

+

+Get into the container:

+

+: $HOME/.config/guix/current/bin/guix environment -C guix --ad-hoc bash gcc-toolchain

+: ./bootstrap

+: ./configure --localstatedir=/var --sysconfdir=/etc

+

+Check that everything works:

+

+: make check

+

+Clean up and build:

+

+: make clean-go

+: make -j 4

+: exit

+

+Install Python3 (substitute paths when necessary):

+

+: env GUIX_PACKAGE_PATH='/home/zas1024/guix-bioinformatics:/home/zas1024/guix-past/modules' $HOME/.config/guix/current/bin/guix install python3-genenetwork2 -p ~/opt/python3-genenetwork2 --substitute-urls="http://guix.genenetwork.org https://berlin.guixsd.org https://ci.guix.gnu.org https://mirror.hydra.gnu.org"