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authorzsloan2021-11-12 10:32:51 -0600
committerGitHub2021-11-12 10:32:51 -0600
commit92c992f6a311fa4d01e479de1bb8da38a3b798d2 (patch)
tree208d44052251096d4cce5c9dc8876066285dc403
parentfd4abaaeb18c31b1d0d8474fe2229d5a31bfc20d (diff)
parente2647916b051f5d46ccb24e08a6c97cbb8f668f2 (diff)
downloadgenenetwork2-92c992f6a311fa4d01e479de1bb8da38a3b798d2.tar.gz
Merge pull request #627 from zsloan/bug/fix_gene_symbol_mapping_error
Fix mapping export error when trait symbols is None
-rw-r--r--wqflask/wqflask/marker_regression/run_mapping.py3
1 files changed, 2 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/run_mapping.py b/wqflask/wqflask/marker_regression/run_mapping.py
index 769b9240..9d70bb15 100644
--- a/wqflask/wqflask/marker_regression/run_mapping.py
+++ b/wqflask/wqflask/marker_regression/run_mapping.py
@@ -556,7 +556,8 @@ def export_mapping_results(dataset, trait, markers, results_path, mapping_method
transform_text = ""
output_file.write(transform_text + "\n")
if dataset.type == "ProbeSet":
- output_file.write("Gene Symbol: " + trait.symbol + "\n")
+ if trait.symbol:
+ output_file.write("Gene Symbol: " + trait.symbol + "\n")
output_file.write("Location: " + str(trait.chr) + \
" @ " + str(trait.mb) + " Mb\n")
if len(covariates) > 0: