diff options
| author | zsloan | 2020-12-18 14:38:09 -0600 |
|---|---|---|
| committer | zsloan | 2020-12-18 14:38:09 -0600 |
| commit | 6d493f7ef57322f226dd310497e4dc7518440cfd (patch) | |
| tree | 05c8e2a68e2407c678b9e7c701c75b671bec3dec | |
| parent | 7544d03a6d819d70779deb79d38b7465a648c1ff (diff) | |
| download | genenetwork2-6d493f7ef57322f226dd310497e4dc7518440cfd.tar.gz | |
Changed display_mapping_results.py to get sample names and values from the JSON sample_vals parameter
| -rw-r--r-- | wqflask/wqflask/marker_regression/display_mapping_results.py | 19 |
1 files changed, 9 insertions, 10 deletions
diff --git a/wqflask/wqflask/marker_regression/display_mapping_results.py b/wqflask/wqflask/marker_regression/display_mapping_results.py index 08c2d750..9f1b050d 100644 --- a/wqflask/wqflask/marker_regression/display_mapping_results.py +++ b/wqflask/wqflask/marker_regression/display_mapping_results.py @@ -270,8 +270,9 @@ class DisplayMappingResults(object): # Needing for form submission when doing single chr # mapping or remapping after changing options - self.samples = start_vars['samples'] - self.vals = start_vars['vals'] + self.sample_vals = start_vars['sample_vals'] + self.sample_vals_dict = json.loads(self.sample_vals) + self.transform = start_vars['transform'] self.mapping_method = start_vars['mapping_method'] self.mapping_results_path = start_vars['mapping_results_path'] @@ -492,11 +493,10 @@ class DisplayMappingResults(object): ## count the amount of individuals to be plotted, and increase self.graphHeight if self.haplotypeAnalystChecked and self.selectedChr > -1: thisTrait = self.this_trait - _strains, _vals, _vars, _aliases = thisTrait.export_informative() smd=[] - for ii, _val in enumerate(self.vals): - if _val != "x": - temp = GeneralObject(name=self.samples[ii], value=float(_val)) + for sample in self.sample_vals_dict.keys(): + if self.sample_vals_dict[sample] != "x": + temp = GeneralObject(name=sample, value=float(self.sample_vals_dict[sample])) smd.append(temp) else: continue @@ -1464,12 +1464,11 @@ class DisplayMappingResults(object): yPaddingTop = yTopOffset thisTrait = self.this_trait - _strains, _vals, _vars, _aliases = thisTrait.export_informative() smd=[] - for ii, _val in enumerate(self.vals): - if _val != "x": - temp = GeneralObject(name=self.samples[ii], value=float(_val)) + for sample in self.sample_vals_dict.keys(): + if self.sample_vals_dict[sample] != "x": + temp = GeneralObject(name=sample, value=float(self.sample_vals_dict[sample])) smd.append(temp) else: continue |