diff options
| author | zsloan | 2020-12-03 13:45:21 -0600 |
|---|---|---|
| committer | zsloan | 2020-12-03 13:45:21 -0600 |
| commit | 5506ac96077db794c945cc1325300dead8073eea (patch) | |
| tree | 549311971d6e6d2130990d71b891d551bb31c4fd | |
| parent | 3147f1eec3aee3b7844a3ac88cd58fafe53207b3 (diff) | |
| download | genenetwork2-5506ac96077db794c945cc1325300dead8073eea.tar.gz | |
Convert trait/dataset names to strings, since phenotype names were being treated as integers
| -rw-r--r-- | wqflask/wqflask/correlation/show_corr_results.py | 1 | ||||
| -rw-r--r-- | wqflask/wqflask/export_traits.py | 2 |
2 files changed, 2 insertions, 1 deletions
diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py index 1b801b1d..51aa1622 100644 --- a/wqflask/wqflask/correlation/show_corr_results.py +++ b/wqflask/wqflask/correlation/show_corr_results.py @@ -487,6 +487,7 @@ def generate_corr_json(corr_results, this_trait, dataset, target_dataset, for_ap results_dict['index'] = i + 1 results_dict['trait_id'] = trait.name results_dict['dataset'] = trait.dataset.name + results_dict['hmac'] = hmac.data_hmac('{}:{}'.format(trait.name, trait.dataset.name)) if target_dataset.type == "ProbeSet": results_dict['symbol'] = trait.symbol results_dict['description'] = "N/A" diff --git a/wqflask/wqflask/export_traits.py b/wqflask/wqflask/export_traits.py index b14c55db..6fb760e0 100644 --- a/wqflask/wqflask/export_traits.py +++ b/wqflask/wqflask/export_traits.py @@ -86,7 +86,7 @@ def export_search_results_csv(targs): trait_symbol = "N/A" row_contents = [ i + 1, - "https://genenetwork.org/show_trait?trait_id=" + trait.name + "&dataset=" + trait.dataset.name, + "https://genenetwork.org/show_trait?trait_id=" + str(trait.name) + "&dataset=" + str(trait.dataset.name), trait.dataset.group.species, trait.dataset.group.name, trait.dataset.name, |