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| author | Pjotr Prins | 2018-01-29 11:30:28 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2018-01-29 11:30:28 +0000 |
| commit | 06b203e722c0061aae6c16f877619dc7af03638e (patch) | |
| tree | ac97f932deab04807bc4677843736791d70a0ebe | |
| parent | 85316a82ec5df2c155f3c4d1dfd3739acf3d4145 (diff) | |
| download | genenetwork2-06b203e722c0061aae6c16f877619dc7af03638e.tar.gz | |
Added checks in startup script, removed r-auwerx path
| -rwxr-xr-x | bin/genenetwork2 | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2 index a7edb1c2..c6b08771 100755 --- a/bin/genenetwork2 +++ b/bin/genenetwork2 @@ -86,6 +86,9 @@ else export PYLMM_COMMAND="$GN2_PROFILE/bin/pylmm_redis" export GEMMA_COMMAND="$GN2_PROFILE/bin/gemma" export GEMMA_WRAPPER_COMMAND="$GN2_PROFILE/bin/gemma-wrapper" + if [ ! -d $PYTHONPATH ] ; then echo "PYTHONPATH not valid "$PYTHONPATH ; exit 1 ; fi + if [ ! -d $R_LIBS_SITE ] ; then echo "R_LIBS_SITE not valid "$R_LIBS_SITE ; exit 1 ; fi + if [ ! -d $GEM_PATH ] ; then echo "GEM_PATH not valid "$GEM_PATH ; exit 1 ; fi fi if [ -z $PYTHONPATH ] ; then echo "ERROR PYTHONPATH has not been set - use GN2_PROFILE!" @@ -127,7 +130,7 @@ dbfilename gn2.rdb " | redis-server - & # Overrides for packages that are not yet public (currently r-auwerx) -export R_LIBS_SITE=$R_LIBS_SITE:$HOME/.Rlibs/das1i1pm54dj6lbdcsw5w0sdwhccyj1a-r-3.3.2/lib/R/lib +# export R_LIBS_SITE=$R_LIBS_SITE:$HOME/.Rlibs/das1i1pm54dj6lbdcsw5w0sdwhccyj1a-r-3.3.2/lib/R/lib # Start the flask server running GN2 cd $GN2_BASE_DIR/wqflask |