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| author | zsloan | 2020-11-13 14:14:23 -0600 |
|---|---|---|
| committer | zsloan | 2020-11-13 14:14:23 -0600 |
| commit | 92848edd669925dfd3c9e0722a99fd39dbbfd4b8 (patch) | |
| tree | e196f06b0bf7ac45ce778266f5d68b7c794e41df | |
| parent | db0e80bef73eb163bfb747ec4d137d5c5069ade8 (diff) | |
| download | genenetwork2-92848edd669925dfd3c9e0722a99fd39dbbfd4b8.tar.gz | |
Changed some if/else statements to just initializing the variables + the
if statement and fixed "lrs_location" to "location" for target genotypes
| -rw-r--r-- | wqflask/wqflask/correlation/show_corr_results.py | 19 |
1 files changed, 7 insertions, 12 deletions
diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py index 394c113d..17d3de54 100644 --- a/wqflask/wqflask/correlation/show_corr_results.py +++ b/wqflask/wqflask/correlation/show_corr_results.py @@ -489,25 +489,20 @@ def generate_corr_json(corr_results, this_trait, dataset, target_dataset, for_ap results_dict['dataset'] = trait.dataset.name if target_dataset.type == "ProbeSet": results_dict['symbol'] = trait.symbol - if len(trait.description_display) > 40: - results_dict['description'] = trait.description_display[:40] + "..." - else: - results_dict['description'] = trait.description_display - results_dict['description'] = trait.description_display + results_dict['description'] = "N/A" results_dict['location'] = trait.location_repr + results_dict['mean'] = "N/A" + results_dict['lrs_score'] = "N/A" + results_dict['additive'] = "N/A" + if trait.description_display: + results_dict['description'] = trait.description_display if trait.mean and trait.mean != "": results_dict['mean'] = float(trait.mean) - else: - results_dict['mean'] = "N/A" if trait.LRS_score_repr != "N/A": results_dict['lrs_score'] = "%.1f" % float(trait.LRS_score_repr) - else: - results_dict['lrs_score'] = "N/A" results_dict['lrs_location'] = trait.LRS_location_repr if trait.additive and trait.additive != "": results_dict['additive'] = "%0.3f" % float(trait.additive) - else: - results_dict['additive'] = "N/A" results_dict['sample_r'] = "%0.3f" % float(trait.sample_r) results_dict['num_overlap'] = trait.num_overlap results_dict['sample_p'] = "%0.3e" % float(trait.sample_p) @@ -558,7 +553,7 @@ def generate_corr_json(corr_results, this_trait, dataset, target_dataset, for_ap results_dict['num_overlap'] = trait.num_overlap results_dict['sample_p'] = "%0.3e" % float(trait.sample_p) else: - results_dict['lrs_location'] = trait.LRS_location_repr + results_dict['location'] = trait.location_repr results_dict['sample_r'] = "%0.3f" % trait.sample_r results_dict['num_overlap'] = trait.num_overlap results_dict['sample_p'] = "%0.3e" % float(trait.sample_p) |