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authorPjotr Prins2015-03-17 17:15:56 +0300
committerPjotr Prins2015-03-17 17:15:56 +0300
commite615b83d34bcc991e671241db71c6ad0c0267479 (patch)
tree88a97cd5024cdce2e84cbd39e0e7be803b08a6ba
parentc4132c7ec5e0d720c4229563c9edddbcfc2e7fa6 (diff)
downloadgenenetwork2-e615b83d34bcc991e671241db71c6ad0c0267479.tar.gz
Release 0.50-gn2-pre1
-rw-r--r--wqflask/wqflask/my_pylmm/README.md22
1 files changed, 17 insertions, 5 deletions
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--- a/wqflask/wqflask/my_pylmm/README.md
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@@ -1,9 +1,21 @@
# RELEASE NOTES
-## 0.50-gn2-pre1
+## 0.50-gn2-pre1 release
+
+This is the first test release of multi-core pylmm into GN2. Both
+kinship calculation and GWAS have been made multi-threaded by
+introducing the Python multiprocessing module. Note that only
+run_other has been updated to use the new routines (so human is still
+handled the old way). I have taken care that we can still run both
+old-style and new-style LMM (through passing the 'new_code'
+boolean). This could be an option in the web server for users to
+select and test for any unexpected differences (of which there should
+be none, naturally ;).
+
+The current version can handle missing phenotypes, but as they are
+removed there is no way for GN2 to know what SNPs the P-values belong
+to. A future version will pass a SNP index to allow for missing
+phenotypes.
+
-1. This is the first test release of multi-core pylmm into GN2. Both
- Kinship K calculation and GWAS have been made multi-threaded by
- introducing the Python multiprocessing module. Note that only
- run_other has been updated to use the new routines.
\ No newline at end of file