Changed appearance of tables to more easily differentiate them from the rest of the page (still not totally pleased with them though)

Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A.

7 files changed, 109 insertions, 59 deletions

diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py
index 0c962331..a71d8157 100644
--- a/wqflask/base/trait.py
+++ b/wqflask/base/trait.py
@@ -444,9 +444,9 @@ class GeneralTrait(object):
                                 self.locus_chr = result[0]
                                 self.locus_mb = result[1]
                             else:
-                                self.locus = self.locus_chr = self.locus_mb = ""
+                                self.locus = self.locus_chr = self.locus_mb = self.additive = ""
                         else:
-                            self.locus = self.locus_chr = self.locus_mb = ""
+                            self.locus = self.locus_chr = self.locus_mb = self.additive = ""
                     else:
                         self.locus = self.locus_chr = self.locus_mb = self.lrs = self.pvalue = self.mean = self.additive = ""
 
@@ -476,9 +476,9 @@ class GeneralTrait(object):
                                 self.locus_chr = result[0]
                                 self.locus_mb = result[1]
                             else:
-                                self.locus = self.locus_chr = self.locus_mb = ""
+                                self.locus = self.locus_chr = self.locus_mb = self.additive = ""
                         else:
-                            self.locus = self.locus_chr = self.locus_mb = ""
+                            self.locus = self.locus_chr = self.locus_mb = self.additive = ""
                     else:
                         self.locus = self.lrs = self.additive = ""
                 
@@ -492,9 +492,10 @@ class GeneralTrait(object):
                         else:
                             LRS_location_value = ord(str(self.locus_chr).upper()[0])*1000 + float(self.locus_mb)
 
-                    self.LRS_location_repr = LRS_location_repr = 'Chr%s: %.6f' % (self.locus_chr, float(self.locus_mb))                                        
-                    self.LRS_score_repr = LRS_score_repr = '%3.1f' % self.lrs
-                    self.LRS_score_value = LRS_score_value = self.lrs
+                    self.LRS_location_repr = LRS_location_repr = 'Chr%s: %.6f' % (self.locus_chr, float(self.locus_mb))
+                    if self.lrs != "":                                     
+                        self.LRS_score_repr = LRS_score_repr = '%3.1f' % self.lrs
+                        self.LRS_score_value = LRS_score_value = self.lrs
         else:
             raise KeyError, `self.name`+' information is not found in the database.'
 
diff --git a/wqflask/wqflask/static/new/packages/DataTables/js/dataTables.naturalSort.js b/wqflask/wqflask/static/new/packages/DataTables/js/dataTables.naturalSort.js
index 0198fd48..dbb40446 100755
--- a/wqflask/wqflask/static/new/packages/DataTables/js/dataTables.naturalSort.js
+++ b/wqflask/wqflask/static/new/packages/DataTables/js/dataTables.naturalSort.js
@@ -49,16 +49,16 @@ function naturalSort (a, b) {
 jQuery.extend( jQuery.fn.dataTableExt.oSort, {
     "natural-asc": function ( a, b ) {
         // first check if null or n/a
-        if (a == "N/A" || a == "NA") return 1;
-        else if (b == "N/A" || b == "NA") return -1;
+        if (a == "N/A" || a == "NA" || a == "") return 1;
+        else if (b == "N/A" || b == "NA" || b == "") return -1;
         else {
             return naturalSort(a,b);
         }
     },
  
     "natural-desc": function ( a, b ) {
-        if (a == "N/A" || a == "NA") return 1;
-        else if (b == "N/A" || b == "NA") return -1;
+        if (a == "N/A" || a == "NA" || a == "") return 1;
+        else if (b == "N/A" || b == "NA" || b == "") return -1;
         else {
             return naturalSort(a,b) * -1;
         }
diff --git a/wqflask/wqflask/templates/base.html b/wqflask/wqflask/templates/base.html
index b4fdbd8e..759c4a8d 100755
--- a/wqflask/wqflask/templates/base.html
+++ b/wqflask/wqflask/templates/base.html
@@ -19,7 +19,7 @@
 
 </head>
 
-<body style="width: 1500px !important;">
+<body style="width: 100% !important;">
     <!-- Navbar ================================================== -->
 
     <div class="navbar navbar-inverse navbar-static-top pull-left" role="navigation">
diff --git a/wqflask/wqflask/templates/collections/view.html b/wqflask/wqflask/templates/collections/view.html
index c1563b9c..288207e7 100755
--- a/wqflask/wqflask/templates/collections/view.html
+++ b/wqflask/wqflask/templates/collections/view.html
@@ -92,18 +92,19 @@
             <button class="btn" id="remove" disabled="disabled"><i class="icon-minus-sign"></i> Remove Record</button>
             <br />
             <br />
+        <div style="background-color: #eeeeee; border: 1px solid black;">
         <table class="table table-hover table-striped" id='trait_table'>
             <thead>
                 <tr>
-                    <th></th>
-                    <th>Index</th>
-                    <th>Record</th>
-                    <th>Description</th>
-                    <th>Location</th>
-                    <th>Mean</th>
-                    <th>Max LRS<a href="http://genenetwork.org//glossary.html#L" target="_blank"><sup style="color:#f00">  ?</sup></a></th>
-                    <th>Max LRS Location</th>
-                    <th>Additive Effect<a href="http://genenetwork.org//glossary.html#A" target="_blank"><sup style="color:#f00">  ?</sup></a></th>
+                    <th style="background-color: #eeeeee;"></th>
+                    <th style="background-color: #eeeeee;">Index</th>
+                    <th style="background-color: #eeeeee;">Record</th>
+                    <th style="background-color: #eeeeee;">Description</th>
+                    <th style="background-color: #eeeeee;">Location</th>
+                    <th style="background-color: #eeeeee;">Mean</th>
+                    <th style="background-color: #eeeeee;">Max LRS<a href="http://genenetwork.org//glossary.html#L" target="_blank"><sup style="color:#f00">  ?</sup></a></th>
+                    <th style="background-color: #eeeeee;">Max LRS Location</th>
+                    <th style="background-color: #eeeeee;">Additive Effect<a href="http://genenetwork.org//glossary.html#A" target="_blank"><sup style="color:#f00">  ?</sup></a></th>
                 </tr>
             </thead>
 
@@ -136,6 +137,7 @@
             </tbody>
 
         </table>
+        </div>
         <br />
         </div>
     </div>
diff --git a/wqflask/wqflask/templates/gsearch_gene.html b/wqflask/wqflask/templates/gsearch_gene.html
index ff4254aa..70cafcfe 100755
--- a/wqflask/wqflask/templates/gsearch_gene.html
+++ b/wqflask/wqflask/templates/gsearch_gene.html
@@ -23,24 +23,24 @@
 
             <br />
             <br />
-            <div style="width: 2000px;">
+            <div style="width: 2000px; background-color: #eeeeee; border: 1px solid black;">
               <table width="2000px" id="trait_table" class="table table-hover table-striped" >
                 <thead>
                   <tr>
-                    <th></th>
-                    <th>Index</th>
-                    <th>Species</th> 
-                    <th>Group</th> 
-                    <th>Tissue</th> 
-                    <th>Dataset</th> 
-                    <th>Record</th> 
-                    <th>Symbol</th> 
-                    <th>Description</th> 
-                    <th>Location</th>
-                    <th>Mean</th>
-                    <th>Max&nbsp;&nbsp;<br>LRS<a href="http://genenetwork.org/glossary.html#L" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
-                    <th>Max LRS Location</th>
-                    <th>Additive<br>Effect<a href="http://genenetwork.org/glossary.html#A" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
+                    <th style="background-color: #eeeeee;"></th>
+                    <th style="background-color: #eeeeee;">Index</th>
+                    <th style="background-color: #eeeeee;">Species</th> 
+                    <th style="background-color: #eeeeee;">Group</th> 
+                    <th style="background-color: #eeeeee;">Tissue</th> 
+                    <th style="background-color: #eeeeee;">Dataset</th> 
+                    <th style="background-color: #eeeeee;">Record</th> 
+                    <th style="background-color: #eeeeee;">Symbol</th> 
+                    <th style="background-color: #eeeeee;">Description</th> 
+                    <th style="background-color: #eeeeee;">Location</th>
+                    <th style="background-color: #eeeeee;">Mean</th>
+                    <th style="background-color: #eeeeee;">Max&nbsp;&nbsp;<br>LRS<a href="http://genenetwork.org/glossary.html#L" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
+                    <th style="background-color: #eeeeee;">Max LRS Location</th>
+                    <th style="background-color: #eeeeee;">Additive<br>Effect<a href="http://genenetwork.org/glossary.html#A" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
                   </tr>
                 </thead> 
                 <tbody>
@@ -57,11 +57,30 @@
                     <td>{{ this_trait.description_display }}</td>
                     <td align="right">{{ this_trait.location_repr }}</td>
                     <td align="right">{{ '%0.3f' % this_trait.mean|float }}</td>
-                    <td align="right">{{ '%0.1f' % this_trait.LRS_score_repr|float }}</td>
+                    <td align="right">{% if this_trait.LRS_score_repr != "N/A" %}{{ '%0.1f' % this_trait.LRS_score_repr|float }}{% else %}N/A{% endif %}</td>
                     <td align="right">{{ this_trait.LRS_location_repr }}</td>
-                    <td align="right">{{ '%0.3f' % this_trait.additive|float }}</td>
+                    <td align="right">{% if this_trait.additive != "" %}{{ '%0.3f' % this_trait.additive|float }}{% else %}N/A{% endif %}</td>
                   </tr>
                   {% endfor %}
+                </tbody>
+                <tfoot>
+                  <tr>
+                    <th style="background-color: #eeeeee;"></th>
+                    <th style="background-color: #eeeeee;">Index</th>
+                    <th style="background-color: #eeeeee;">Species</th> 
+                    <th style="background-color: #eeeeee;">Group</th> 
+                    <th style="background-color: #eeeeee;">Tissue</th> 
+                    <th style="background-color: #eeeeee;">Dataset</th> 
+                    <th style="background-color: #eeeeee;">Record</th> 
+                    <th style="background-color: #eeeeee;">Symbol</th> 
+                    <th style="background-color: #eeeeee;">Description</th> 
+                    <th style="background-color: #eeeeee;">Location</th>
+                    <th style="background-color: #eeeeee;">Mean</th>
+                    <th style="background-color: #eeeeee;">Max&nbsp;&nbsp;<br>LRS<a href="http://genenetwork.org/glossary.html#L" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
+                    <th style="background-color: #eeeeee;">Max LRS Location</th>
+                    <th style="background-color: #eeeeee;">Additive<br>Effect<a href="http://genenetwork.org/glossary.html#A" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
+                  </tr>
+                </tfoot> 
               </table>
             </div>
         </div>
diff --git a/wqflask/wqflask/templates/gsearch_pheno.html b/wqflask/wqflask/templates/gsearch_pheno.html
index b1f86adc..9be0349f 100755
--- a/wqflask/wqflask/templates/gsearch_pheno.html
+++ b/wqflask/wqflask/templates/gsearch_pheno.html
@@ -25,21 +25,21 @@
             <input type="text" id="select_top" class="form-control" style="width: 200px; display: inline;" placeholder="Select Top ...">
             <br />
             <br />
-            <div style="width: 1500px;">
+            <div style="width: 1500px; background-color: #eeeeee; border: 1px solid black;">
             <table width="1500px" id="trait_table" class="table table-hover table-striped">
                 <thead>
                     <tr>
-                        <th></th>
-                        <th>Index</th>
-                        <th>Species</th>
-                        <th>Group</th>
-                        <th>Record</th>
-                        <th>Description</th>
-                        <th>Authors</th>
-                        <th>Year</th>
-                        <th style="text-align: right;">Max&nbsp;&nbsp;<br>LRS<a href="http://genenetwork.org//glossary.html#L" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
-                        <th>Max LRS Location</th>
-                        <th style="text-align: right;">Additive<br>Effect<a href="http://genenetwork.org//glossary.html#A" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
+                        <th style="background-color: #eeeeee;"></th>
+                        <th style="background-color: #eeeeee;">Index</th>
+                        <th style="background-color: #eeeeee;">Species</th>
+                        <th style="background-color: #eeeeee;">Group</th>
+                        <th style="background-color: #eeeeee;">Record</th>
+                        <th style="background-color: #eeeeee;">Description</th>
+                        <th style="background-color: #eeeeee;">Authors</th>
+                        <th style="background-color: #eeeeee;">Year</th>
+                        <th style="background-color: #eeeeee; text-align: right;">Max&nbsp;&nbsp;<br>LRS<a href="http://genenetwork.org//glossary.html#L" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
+                        <th style="background-color: #eeeeee;">Max LRS Location</th>
+                        <th style="background-color: #eeeeee; text-align: right;">Additive<br>Effect<a href="http://genenetwork.org//glossary.html#A" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
                     </tr>
                 </thead>
                 <tbody>
@@ -53,12 +53,27 @@
                         <td>{{ this_trait.description_display }}</td>
                         <td>{{ this_trait.authors }}</td>
                         <td><a href="{{ this_trait.pubmed_link }}">{{ this_trait.pubmed_text }}</a></td>
-                        <td align="right">{{ '%0.1f' % this_trait.LRS_score_repr|float }}</td>
+                        <td align="right">{% if this_trait.LRS_score_repr != "N/A" %}{{ '%0.1f' % this_trait.LRS_score_repr|float }}{% else %}N/A{% endif %}</td>
                         <td align="right">{{ this_trait.LRS_location_repr }}</td>
-                        <td align="right">{{ '%0.3f' % this_trait.additive|float }}</td>
+                        <td align="right">{% if this_trait.additive != "" %}{{ this_trait.additive }}{% else %}N/A{% endif %}</td>
                     </TR>
                 {% endfor %}
                 </tbody>
+                <tfoot>
+                    <tr>
+                        <th style="background-color: #eeeeee;"></th>
+                        <th style="background-color: #eeeeee;">Index</th>
+                        <th style="background-color: #eeeeee;">Species</th>
+                        <th style="background-color: #eeeeee;">Group</th>
+                        <th style="background-color: #eeeeee;">Record</th>
+                        <th style="background-color: #eeeeee;">Description</th>
+                        <th style="background-color: #eeeeee;">Authors</th>
+                        <th style="background-color: #eeeeee;">Year</th>
+                        <th style="background-color: #eeeeee; text-align: right;">Max&nbsp;&nbsp;<br>LRS<a href="http://genenetwork.org//glossary.html#L" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
+                        <th style="background-color: #eeeeee;">Max LRS Location</th>
+                        <th style="background-color: #eeeeee; text-align: right;">Additive<br>Effect<a href="http://genenetwork.org//glossary.html#A" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
+                    </tr>
+                </tfoot>
             </table>
             </div>
         </div>
diff --git a/wqflask/wqflask/templates/search_result_page.html b/wqflask/wqflask/templates/search_result_page.html
index 7d852e42..7d25dc61 100755
--- a/wqflask/wqflask/templates/search_result_page.html
+++ b/wqflask/wqflask/templates/search_result_page.html
@@ -89,18 +89,18 @@
           {% endif %}
 -->
 
-          <div id="table_container">
+          <div id="table_container" style="background-color: #eeeeee; border: 1px solid black;">
             <table class="table table-hover table-striped" id='trait_table' {% if dataset.type == 'Geno' %}width="400px"{% endif %} style="float: left;">
                 <thead>
                     <tr>
-                        <th style="width: 30px;"></th>
+                        <th style="background-color: #eeeeee;"></th>
                     {% for header in header_fields %}
                         {% if header == 'Max LRS' %}
-                        <th style="text-align: right;">Max&nbsp;&nbsp;<br>LRS</th>
+                        <th style="background-color: #eeeeee; text-align: right;">Max<br>LRS</th>
                         {% elif header == 'Additive Effect' %}
-                        <th style="text-align: right;">Additive<br>Effect<a href="http://genenetwork.org//glossary.html#A" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
+                        <th style="background-color: #eeeeee; text-align: right;">Additive<br>Effect<a href="http://genenetwork.org//glossary.html#A" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
                         {% else %}
-                        <th>{{header}}</th>
+                        <th style="background-color: #eeeeee;">{{header}}</th>
                         {% endif %}
                     {% endfor %}
                     </tr>
@@ -145,7 +145,20 @@
                     </TR>
                 {% endfor %}
                 </tbody>
-
+                <tfoot>
+                    <tr>
+                        <th style="width: 30px;"></th>
+                    {% for header in header_fields %}
+                        {% if header == 'Max LRS' %}
+                        <th style="text-align: right;">Max<br>LRS</th>
+                        {% elif header == 'Additive Effect' %}
+                        <th style="text-align: right;">Additive<br>Effect<a href="http://genenetwork.org//glossary.html#A" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
+                        {% else %}
+                        <th>{{header}}</th>
+                        {% endif %}
+                    {% endfor %}
+                    </tr>
+                </tfoot>
             </table>
           </div>
         </div>
@@ -251,7 +264,7 @@
                 "iDisplayLength": -1,
                 "bDeferRender": true,
                 "bSortClasses": false,
-                "scrollY": "700px",
+                "scrollY": true,
                 "scrollCollapse": false,
                 "paging": false
             } );