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| author | Pjotr Prins | 2016-09-24 08:27:22 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2016-09-25 07:40:42 +0000 |
| commit | a15dda37ffa6f77dbbc349302760c9a25541df9e (patch) | |
| tree | 9421206fbb7ae4ec92325ebe9da4c92a3dfcca15 | |
| parent | e7693e53821747d294452c9bff7e8b0f38a0eb8e (diff) | |
| download | genenetwork2-a15dda37ffa6f77dbbc349302760c9a25541df9e.tar.gz | |
I was getting below error with the small database. This commit, at least, does
not assume the item exists.
ERROR:wqflask:Exception on /marker_regression [POST]
Traceback (most recent call last):
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1817, in wsgi_app
response = self.full_dispatch_request()
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1477, in full_dispatch_request
rv = self.handle_user_exception(e)
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1381, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1475, in full_dispatch_request
rv = self.dispatch_request()
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1461, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "/export2/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/views.py", line 460, in marker_regression_page
template_vars = marker_regression.MarkerRegression(start_vars, temp_uuid)
File "/export2/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/marker_regression/marker_regression.py", line 74, in __init__
value = start_vars['value:' + sample]
KeyError: 'value:BXD80'
| -rw-r--r-- | wqflask/wqflask/marker_regression/marker_regression.py | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/wqflask/wqflask/marker_regression/marker_regression.py b/wqflask/wqflask/marker_regression/marker_regression.py index a1065adc..d2b27991 100644 --- a/wqflask/wqflask/marker_regression/marker_regression.py +++ b/wqflask/wqflask/marker_regression/marker_regression.py @@ -59,6 +59,7 @@ class MarkerRegression(object): primary_sample_names = list(all_samples_ordered) for sample in self.dataset.group.samplelist: + # sample is actually the name of an individual in_trait_data = False for item in self.this_trait.data: if self.this_trait.data[item].name == sample: @@ -68,9 +69,10 @@ class MarkerRegression(object): in_trait_data = True break if not in_trait_data: - value = start_vars['value:' + sample] - self.samples.append(sample) - self.vals.append(value) + value = start_vars.get('value:' + sample) + if value: + self.samples.append(sample) + self.vals.append(value) self.mapping_method = start_vars['method'] if start_vars['manhattan_plot'] == "True": |