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| author | zsloan | 2019-07-17 14:09:00 -0500 |
|---|---|---|
| committer | zsloan | 2019-07-17 14:09:00 -0500 |
| commit | 6dab4e5935b87ad818129e3b4bfab4cfa465addf (patch) | |
| tree | 53b1bb122424e052472c81f8cc7e4a86a33f3b0d | |
| parent | 375c87faac2e1eeee064263aafb1e20480643eb7 (diff) | |
| download | genenetwork2-6dab4e5935b87ad818129e3b4bfab4cfa465addf.tar.gz | |
Hopefully fixed the issue with weird characters in search result descriptions
| -rw-r--r-- | wqflask/wqflask/gsearch.py | 6 | ||||
| -rw-r--r-- | wqflask/wqflask/search_results.py | 5 |
2 files changed, 5 insertions, 6 deletions
diff --git a/wqflask/wqflask/gsearch.py b/wqflask/wqflask/gsearch.py index 8df8c9a3..dbb77826 100644 --- a/wqflask/wqflask/gsearch.py +++ b/wqflask/wqflask/gsearch.py @@ -75,7 +75,7 @@ class GSearch(object): this_trait['group'] = line[1] this_trait['tissue'] = line[2] this_trait['symbol'] = line[6] - this_trait['description'] = line[7] + this_trait['description'] = line[7].decode('utf-8', 'replace') this_trait['location_repr'] = 'N/A' if (line[8] != "NULL" and line[8] != "") and (line[9] != 0): this_trait['location_repr'] = 'Chr%s: %.6f' % (line[8], float(line[9])) @@ -152,9 +152,9 @@ class GSearch(object): this_trait['species'] = line[0] this_trait['group'] = line[1] if line[9] != None and line[6] != None: - this_trait['description'] = unicode(line[6], "utf-8", "ignore") + this_trait['description'] = line[6].decode('utf-8', 'replace') elif line[5] != None: - this_trait['description'] = unicode(line[5], "utf-8", "ignore") + this_trait['description'] = line[5].decode('utf-8', 'replace') else: this_trait['description'] = "N/A" this_trait['authors'] = line[7] diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py index 278bf930..2ce76c37 100644 --- a/wqflask/wqflask/search_results.py +++ b/wqflask/wqflask/search_results.py @@ -112,7 +112,7 @@ views.py). trait_dict['hmac'] = user_manager.data_hmac('{}:{}'.format(this_trait.name, this_trait.dataset.name)) if this_trait.dataset.type == "ProbeSet": trait_dict['symbol'] = this_trait.symbol - trait_dict['description'] = this_trait.description_display + trait_dict['description'] = this_trait.description_display.decode('utf-8', 'replace') trait_dict['location'] = this_trait.location_repr trait_dict['mean'] = "N/A" trait_dict['additive'] = "N/A" @@ -125,7 +125,7 @@ views.py). elif this_trait.dataset.type == "Geno": trait_dict['location'] = this_trait.location_repr elif this_trait.dataset.type == "Publish": - trait_dict['description'] = this_trait.description_display + trait_dict['description'] = this_trait.description_display.decode('utf-8', 'replace') trait_dict['authors'] = this_trait.authors trait_dict['pubmed_id'] = "N/A" if this_trait.pubmed_id: @@ -179,7 +179,6 @@ views.py). if self.search_term_exists: combined_where_clause = "(" + combined_where_clause + ")" final_query = the_search.compile_final_query(combined_from_clause, combined_where_clause) - # logger.debug("final_query",final_query) results = the_search.execute(final_query) self.results.extend(results) else: |