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authorPjotr Prins2016-10-06 14:47:56 +0000
committerPjotr Prins2016-10-06 14:47:56 +0000
commit472e2f6ee34c508312b5f0e7b3ca2d1728de192c (patch)
tree42fb530ed09480064b3db132adb520be80ea8b90
parent7c065b65e11dc46f326fd492ca6dac37ee4d8d2f (diff)
downloadgenenetwork2-472e2f6ee34c508312b5f0e7b3ca2d1728de192c.tar.gz
URLs: update GO database URL and removed opening new browser pages
-rw-r--r--wqflask/wqflask/templates/index_page.html39
1 files changed, 19 insertions, 20 deletions
diff --git a/wqflask/wqflask/templates/index_page.html b/wqflask/wqflask/templates/index_page.html
index dc7e058c..47181a4c 100644
--- a/wqflask/wqflask/templates/index_page.html
+++ b/wqflask/wqflask/templates/index_page.html
@@ -72,7 +72,7 @@
</div>
<!-- USER HELP -->
- <!--<p >Databases marked with <b>**</b>-->
+ <!--<p>Databases marked with <b>**</b>-->
<!-- suffix are not public yet.<br>-->
<!-- Access requires <a href="/account.html" target=-->
<!-- "_blank" class="fs14">user login</a>.</p>-->
@@ -140,27 +140,26 @@
chromosome 1 between 25 and 30 Mb.</li>
<li><b>MEAN=(15 16) LRS=(23 46)</b> in the <b>Combined</b> field finds
- highly expressed genes (15 to 16 log2 units) AND with peak <a href="http://www.genenetwork.org/glossary.html#L" target="_blank">LRS</a>
+ highly expressed genes (15 to 16 log2 units) AND with peak <a href="http://www.genenetwork.org/glossary.html#L">LRS</a>
linkage between 23 and 46.</li>
- <li><b>RIF=mitochondrial</b> searches RNA databases for <a href="https://en.wikipedia.org/wiki/GeneRIF" target="_blank">
+ <li><b>RIF=mitochondrial</b> searches RNA databases for <a href="https://en.wikipedia.org/wiki/GeneRIF">
GeneRIF</a> links.</li>
- <li><b>WIKI=nicotine</b> searches <a href="http://www.genenetwork.org/webqtl/main.py?FormID=geneWiki" target="_blank">
+ <li><b>WIKI=nicotine</b> searches <a href="http://www.genenetwork.org/webqtl/main.py?FormID=geneWiki">
GeneWiki</a> for genes that you or other users have annotated
with the word <i>nicotine</i>.</li>
<li><b>GO:0045202</b> searches for synapse-associated genes listed in the
- <a href="http://www.godatabase.org/cgi-bin/amigo/go.cgi" target="_blank">
- Gene Ontology</a>.</li>
+ <a href="http://amigo.geneontology.org/amigo/medial_search?q=GO%3A0045202">Gene Ontology</a>.</li>
<li><b>GO:0045202 LRS=(9 99 Chr4 122 155) cisLRS=(9 999 10)</b>
- finds synapse-associated genes with <a href="http://www.genenetwork.org/glossary.html#E" target="_blank">
+ finds synapse-associated genes with <a href="http://www.genenetwork.org/glossary.html#E">
cis eQTL</a> on Chr 4 from 122 and 155 Mb with LRS scores
between 9 and 999.</li>
<li><b>RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)</b>
- finds diabetes-associated transcripts with peak <a href="http://www.genenetwork.org/glossary.html#E" target="_blank">
+ finds diabetes-associated transcripts with peak <a href="http://www.genenetwork.org/glossary.html#E">
trans eQTLs</a> on Chr 2 between 100 and 105 Mb with LRS
scores between 9 and 999.</li>
</ul>
@@ -176,7 +175,7 @@
<h3>Thirty minute tour</h3>
<p>
Take the 30 minute
- GeneNetwork <a href="http://www.genenetwork.org/tutorial/WebQTLTour/" target="_blank" class="fs14">tour</a> that includes screen shots and
+ GeneNetwork <a href="http://www.genenetwork.org/tutorial/WebQTLTour/" class="fs14">tour</a> that includes screen shots and
typical steps in the analysis.
</p>
@@ -187,8 +186,8 @@
and Database fields above.
</p>
- <p>The <a href="/conditionsofUse.html" target="_blank">conditions</a>
- and <a href="/statusandContact.html" target="_blank">contact
+ <p>The <a href="/conditionsofUse.html">conditions</a>
+ and <a href="/statusandContact.html">contact
</a> pages have information on the status of data sets
and advice on their use and citation.</p>
@@ -201,25 +200,25 @@
</div>
<h3>Websites affiliated with GeneNetwork</h3>
<ul>
- <li><a href="http://ucscbrowser.genenetwork.org/" target="_blank">Genome
+ <li><a href="http://ucscbrowser.genenetwork.org/">Genome
browser</a> at UTHSC</li>
- <li><a href="http://galaxy.genenetwork.org/" target="_blank">Galaxy</a> at
+ <li><a href="http://galaxy.genenetwork.org/">Galaxy</a> at
UTHSC</li>
- <li>GeneNetwork 1 at <a href="http://ec2.genenetwork.org/" target="_blank">Amazon
+ <li>GeneNetwork 1 at <a href="http://ec2.genenetwork.org/">Amazon
Cloud (EC2)</a></li>
- <li>GeneNetwork 1 Source Code at <a href="http://sourceforge.net/projects/genenetwork/" target="_blank">SourceForge</a></li>
+ <li>GeneNetwork 1 Source Code at <a href="http://sourceforge.net/projects/genenetwork/">SourceForge</a></li>
- <li>GeneNetwork 2 Source Code at <a href="https://github.com/genenetwork/genenetwork2" target="_blank">GitHub</a></li>
+ <li>GeneNetwork 2 Source Code at <a href="https://github.com/genenetwork/genenetwork2">GitHub</a></li>
</ul>
<h3>GN1 Mirror and development sites</h3>
<ul>
- <li><a href="http://www.genenetwork.org/" target="_blank">Main GN1 site at UTHSC</a> (main site)</li>
- <li><a href="http://genenetwork.helmholtz-hzi.de/" target="_blank">Germany at the HZI</a></li>
- <li><a href="http://genenetwork.memphis.edu/" target="_blank">Memphis at the U of M</a></li>
+ <li><a href="http://www.genenetwork.org/">Main GN1 site at UTHSC</a> (main site)</li>
+ <li><a href="http://genenetwork.helmholtz-hzi.de/">Germany at the HZI</a></li>
+ <li><a href="http://genenetwork.memphis.edu/">Memphis at the U of M</a></li>
</ul>
</section>
@@ -256,7 +255,7 @@
<h3>User Guide</h3>
<h5>Read the
- <a href="http://www.genenetwork.org/index4.html" target="_blank">
+ <a href="http://www.genenetwork.org/index4.html">
user guide</a>.</h5>
</section>-->