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authorAlexander_Kabui2023-06-21 00:06:30 +0300
committerAlexander_Kabui2023-06-21 00:06:30 +0300
commit7a5f04106ba3df4f3268d56d8813105d31d66733 (patch)
treedc9361950a92da67ac49f5e2ecf6c31e276c4b32
parent650eb1f019de3a921d739c5d00218b4151b4411b (diff)
downloadgenenetwork2-7a5f04106ba3df4f3268d56d8813105d31d66733.tar.gz
code to fetch csv info
-rw-r--r--wqflask/wqflask/correlation/pre_computes.py10
1 files changed, 8 insertions, 2 deletions
diff --git a/wqflask/wqflask/correlation/pre_computes.py b/wqflask/wqflask/correlation/pre_computes.py
index e82eb0ec..c91e3862 100644
--- a/wqflask/wqflask/correlation/pre_computes.py
+++ b/wqflask/wqflask/correlation/pre_computes.py
@@ -190,12 +190,18 @@ def __generate_target_name__(db_name):
f"ProbeSetFreezeId_{results[0]}_{results[1]}")
-def fetch_csv_info(textfile_path: str, db_target_name: str):
+def fetch_csv_info(db_target_name: str, conn):
"""
alternative for processing csv textfiles with rust
!.currently expiremental
"""
- raise ValueError
+ csv_file_path = fetch_text_file(dataset_name, conn)
+ if csv_file_path:
+ return {
+ "file_type": "csv",
+ "lmdb_target_path": "csv_file_path",
+ "lmdb_target_path": "",
+ }
def fetch_lmdb_info(db_path: str, db_target_name: str):