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authorzsloan2020-12-09 15:16:56 -0600
committerzsloan2020-12-09 15:16:56 -0600
commitcdba483dfae360b99a77551b82d27f2d5b6c7b08 (patch)
treee75245abe02485a7c471741854e196e0342d2e40
parent0edd6f931c0204f9cc2a0e64cc5fd7a983e6767d (diff)
downloadgenenetwork2-cdba483dfae360b99a77551b82d27f2d5b6c7b08.tar.gz
Fixed mistake in string formatting the bootstrap option for qtlreaper mapping
-rw-r--r--wqflask/wqflask/marker_regression/qtlreaper_mapping.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/qtlreaper_mapping.py b/wqflask/wqflask/marker_regression/qtlreaper_mapping.py
index 505ae295..b2eb58ae 100644
--- a/wqflask/wqflask/marker_regression/qtlreaper_mapping.py
+++ b/wqflask/wqflask/marker_regression/qtlreaper_mapping.py
@@ -33,7 +33,7 @@ def run_reaper(this_trait, this_dataset, samples, vals, json_data, num_perm, boo
)
opt_list.append("-b")
- opt_list.append(f"--n_bootstrap{str(num_bootstrap)}")
+ opt_list.append(f"--n_bootstrap {str(num_bootstrap)}")
opt_list.append(f"--bootstrap_output{webqtlConfig.GENERATED_IMAGE_DIR}{bootstrap_filename}.txt")
if num_perm > 0:
permu_filename =("{this_dataset.group.name}_PERM_" +