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| author | BonfaceKilz | 2020-10-02 00:39:06 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2020-10-02 00:39:06 +0300 |
| commit | 94c36c8c93bea837a6e277d1dc3a2bc9120f9044 (patch) | |
| tree | e0bc8b5d4fc82ff79b2494ffa4e5b79e9da21fea | |
| parent | 4aa6c2dc7d6e74316e793f219a6a44411fbef5ac (diff) | |
| download | genenetwork2-94c36c8c93bea837a6e277d1dc3a2bc9120f9044.tar.gz | |
Cast "previous_chr" to an int
* wqflask/wqflask/marker_regression/gemma_mapping.py
(parse_loco_output): Cast "previous_chr" to an int which prevents the
error "Python typeerror: ‘>’ not supported between instances of ‘str’
and ‘int’" from being thrown. The error is **only** thrown in Python3.
| -rw-r--r-- | wqflask/wqflask/marker_regression/gemma_mapping.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/wqflask/wqflask/marker_regression/gemma_mapping.py b/wqflask/wqflask/marker_regression/gemma_mapping.py index b858b573..68a8d5ba 100644 --- a/wqflask/wqflask/marker_regression/gemma_mapping.py +++ b/wqflask/wqflask/marker_regression/gemma_mapping.py @@ -218,9 +218,9 @@ def parse_loco_output(this_dataset, gwa_output_filename): marker['chr'] = int(line.split("\t")[0][3:]) else: marker['chr'] = int(line.split("\t")[0]) - if marker['chr'] > previous_chr: + if marker['chr'] > int(previous_chr): previous_chr = marker['chr'] - elif marker['chr'] < previous_chr: + elif marker['chr'] < int(previous_chr): break else: marker['chr'] = line.split("\t")[0] |