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| author | zsloan | 2021-03-17 21:33:06 +0000 |
|---|---|---|
| committer | zsloan | 2021-03-17 21:33:06 +0000 |
| commit | 2eda56348a97abaf61760c732dcc2032232f00aa (patch) | |
| tree | 9f58fb0edd9e5dc0a3064b6cf16540d4f53a68f1 | |
| parent | 025811e559a1e6b1f04cd45f4f69a53fa7bbb379 (diff) | |
| download | genenetwork2-2eda56348a97abaf61760c732dcc2032232f00aa.tar.gz | |
Fixed the logic for creating the RRID links to account for the fact that the rat IDs don't have any prefix with a colon
| -rw-r--r-- | wqflask/wqflask/show_trait/SampleList.py | 13 |
1 files changed, 8 insertions, 5 deletions
diff --git a/wqflask/wqflask/show_trait/SampleList.py b/wqflask/wqflask/show_trait/SampleList.py index 6017f895..112298a1 100644 --- a/wqflask/wqflask/show_trait/SampleList.py +++ b/wqflask/wqflask/show_trait/SampleList.py @@ -71,12 +71,15 @@ class SampleList(object): #ZS: Add a url so RRID case attributes can be displayed as links if 'rrid' in sample.extra_attributes: - if len(sample.extra_attributes['rrid'].split(":")) > 1: - the_rrid = sample.extra_attributes['rrid'].split(":")[1] - sample.extra_attributes['rrid'] = [sample.extra_attributes['rrid']] - if self.dataset.group.species == "mouse": + if self.dataset.group.species == "mouse": + if len(sample.extra_attributes['rrid'].split(":")) > 1: + the_rrid = sample.extra_attributes['rrid'].split(":")[1] + sample.extra_attributes['rrid'] = [sample.extra_attributes['rrid']] sample.extra_attributes['rrid'].append(webqtlConfig.RRID_MOUSE_URL % the_rrid) - elif self.dataset.group.species == "rat": + elif self.dataset.group.species == "rat": + if len(str(sample.extra_attributes['rrid'])): + the_rrid = sample.extra_attributes['rrid'] + sample.extra_attributes['rrid'] = [sample.extra_attributes['rrid']] sample.extra_attributes['rrid'].append(webqtlConfig.RRID_RAT_URL % the_rrid) self.sample_list.append(sample) |