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authorAlexander Kabui2021-10-05 19:49:50 +0300
committerAlexander Kabui2021-10-05 19:49:50 +0300
commit31071d78f2ffb0ae4c7e0b99e74c7729a1a36e9c (patch)
tree390ab545c9480caffe178b11bd2ae218e0ea66b0
parent18b50f56d614021d5727d546f3d6e360575e4468 (diff)
downloadgenenetwork2-31071d78f2ffb0ae4c7e0b99e74c7729a1a36e9c.tar.gz
move xterm code to setup
-rw-r--r--wqflask/wqflask/templates/wgcna_setup.html140
1 files changed, 94 insertions, 46 deletions
diff --git a/wqflask/wqflask/templates/wgcna_setup.html b/wqflask/wqflask/templates/wgcna_setup.html
index 44932389..4b13e54e 100644
--- a/wqflask/wqflask/templates/wgcna_setup.html
+++ b/wqflask/wqflask/templates/wgcna_setup.html
@@ -1,53 +1,101 @@
{% extends "base.html" %}
{% block title %}WCGNA analysis{% endblock %}
-
-{% block content %} <!-- Start of body -->
-
+{% block content %}
+<!-- Start of body -->
+<style type="text/css">
+</style>
+<link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/xterm@4.14.1/css/xterm.css">
+<script src="https://cdn.jsdelivr.net/npm/xterm@4.14.1/lib/xterm.min.js"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/socket.io/4.0.1/socket.io.js" integrity="sha512-q/dWJ3kcmjBLU4Qc47E4A9kTB4m3wuTY7vkFJDTZKjTs8jhyGQnaUrxa0Ytd0ssMZhbNua9hE+E7Qv1j+DyZwA==" crossorigin="anonymous"></script>
<div class="container">
- <div class="col-md-6">
-<h1 class="mx-3 my-2 bg-warning"> WGCNA analysis parameters</h1>
- {% if request.form['trait_list'].split(",")|length < 4 %}
- <div class="alert alert-danger" role="alert">
- <span class="glyphicon glyphicon-exclamation-sign" aria-hidden="true"></span>
- <span class="sr-only">Error:</span>
- <h2>Too few phenotypes as input</h2>
- Please make sure you select enough phenotypes / genes to perform WGCNA. Your collection needs to contain at least 4 different phenotypes. You provided {{request.form['trait_list'].split(',')|length}} phenotypes as input.
- </div>
- {% else %}
- <form class="col-md-12" action="/wgcna_results" method="post" class="form-horizontal">
- <input type="hidden" name="trait_list" id="trait_list" value= "{{request.form['trait_list']}}">
- <div class="form-group row ">
- <label for="SoftThresholds" class="col-md-3 col-form-label col-form-label-sm">Soft threshhold</label>
- <div class="col-md-9">
- <input type="text" class="form-control form-control-md" value="1,2,3,4,5,6,7,8,9" id="SoftThresholds" name="SoftThresholds">
- </div>
- </div>
- <div class="form-group row ">
- <label for="MinModuleSize" class="col-md-3 col-form-label col-form-label-sm">Minimum module size:</label>
- <div class="col-md-9">
- <input type="text" class="form-control form-control-md" id="MinModuleSize" value="MinModuleSize">
- </div>
- </div>
-
- <div class="form-group row ">
- <label for="TOMtype" class="col-md-3 col-form-label col-form-label-sm">TOMtype module size:</label>
- <div class="col-md-9">
- <input type="text" class="form-control form-control-md" id="TOMtype" value="unsigned">
- </div>
- </div>
- <div class="form-group row ">
- <label for="mergeCutHeight" class="col-md-3 col-form-label col-form-label-sm">mergeCutHeight size:</label>
- <div class="col-md-9">
- <input type="text" class="form-control form-control-md" id="mergeCutHeight" value="0.25">
+ <div class="col-md-5">
+ <h1 class="mx-3 my-2 "> WGCNA analysis parameters</h1>
+ {% if request.form['trait_list'].split(",")|length < 4 %} <div class="alert alert-danger" role="alert">
+ <span class="glyphicon glyphicon-exclamation-sign" aria-hidden="true"></span>
+ <span class="sr-only">Error:</span>
+ <h2>Too few phenotypes as input</h2>
+ Please make sure you select enough phenotypes / genes to perform WGCNA. Your collection needs to contain at least 4 different phenotypes. You provided {{request.form['trait_list'].split(',')|length}} phenotypes as input.
</div>
- </div>
- <div class="form-group">
- <div class="text-center">
- <input type="submit" class="btn btn-primary" value="Run WGCNA using these settings" />
- </div>
+ {% else %}
+ <form class="col-md-12" action="/wgcna_results" method="post" class="form-horizontal" id="wgcna_form">
+ <input type="hidden" name="trait_list" id="trait_list" value="{{request.form['trait_list']}}">
+ <div class="form-group row ">
+ <label for="SoftThresholds" class="col-md-3 col-form-label col-form-label-sm">Soft threshhold</label>
+ <div class="col-md-9">
+ <input type="text" class="form-control form-control-md" value="1,2,3,4,5,6,7,8,9" id="SoftThresholds" name="SoftThresholds">
+ </div>
+ </div>
+ <div class="form-group row ">
+ <label for="MinModuleSize" class="col-md-3 col-form-label col-form-label-sm">Minimum module size:</label>
+ <div class="col-md-9">
+ <input type="text" class="form-control form-control-md" id="MinModuleSize" value="MinModuleSize">
+ </div>
+ </div>
+ <div class="form-group row ">
+ <label for="TOMtype" class="col-md-3 col-form-label col-form-label-sm">TOMtype module size:</label>
+ <div class="col-md-9">
+ <input type="text" class="form-control form-control-md" id="TOMtype" value="unsigned">
+ </div>
+ </div>
+ <div class="form-group row ">
+ <label for="mergeCutHeight" class="col-md-3 col-form-label col-form-label-sm">mergeCutHeight size:</label>
+ <div class="col-md-9">
+ <input type="text" class="form-control form-control-md" id="mergeCutHeight" value="0.25">
+ </div>
+ </div>
+ <div class="form-group">
+ <div class="text-center">
+ <input type="submit" class="btn btn-primary" value="Run WGCNA using these settings" />
+ </div>
+ </div>
+ </form>
+ {% endif %}
+</div>
+<div class="col-md-7">
+ <div class="col-md-10 mx-5">
+ <div id="terminal">
+ </div>
</div>
-</form>
- {% endif %}
</div>
</div>
-{% endblock %}
+<script>
+document.addEventListener('DOMContentLoaded', function() {
+
+
+
+ let term = new Terminal({ cursorBlink: true, lineHeight: 1.3 });
+
+ const fitAddon = new FitAddon.FitAddon();
+ term.loadAddon(fitAddon);
+ term.open(document.getElementById('terminal'));
+ term.setOption('theme', {
+ background: '#300a24'
+ });
+
+ term.writeln("Waiting for you to click the compute button....")
+
+ wgcnaForm = document.querySelector("#wgcna_form")
+
+ if (wgcnaForm) {
+
+ wgcnaForm.addEventListener("submit", (e) => {
+ term.writeln("Computation in process ......")
+ })
+
+ // open socket connection
+
+ const socket = io(`${GN_SERVER_URL}`)
+ // add namespace
+ socket.on("output",({data})=>{
+
+ term.writeln(data)
+
+ })
+ } else {
+ term.writeln("Too few phenotypes as input must be >=4")
+ }
+
+
+});
+</script>
+{% endblock %} \ No newline at end of file