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| author | Pjotr Prins | 2015-03-18 13:36:35 +0300 |
|---|---|---|
| committer | Pjotr Prins | 2015-03-18 13:36:35 +0300 |
| commit | 803c3c56c37e448fd52fa102fdb6eef8431154cc (patch) | |
| tree | 456035d93a688fa5cb6ded3f231e462ae3d10e99 | |
| parent | 130afd633fc50cbccaf2d12e5e643eb5f8b98c6f (diff) | |
| download | genenetwork2-803c3c56c37e448fd52fa102fdb6eef8431154cc.tar.gz | |
Tagging 0.50-gn2-pre2
| -rw-r--r-- | wqflask/wqflask/my_pylmm/README.md | 35 | ||||
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/__init__.py | 2 |
2 files changed, 21 insertions, 16 deletions
diff --git a/wqflask/wqflask/my_pylmm/README.md b/wqflask/wqflask/my_pylmm/README.md index f6b0e72d..a84b5be2 100644 --- a/wqflask/wqflask/my_pylmm/README.md +++ b/wqflask/wqflask/my_pylmm/README.md @@ -1,21 +1,26 @@ -# RELEASE NOTES +# Genenetwork2/pylmm RELEASE NOTES -## 0.50-gn2-pre1 release +## 0.50-gn2-pre2 -This is the first test release of multi-core pylmm into GN2. Both -kinship calculation and GWAS have been made multi-threaded by -introducing the Python multiprocessing module. Note that only -run_other has been updated to use the new routines (so human is still -handled the old way). I have taken care that we can still run both -old-style and new-style LMM (through passing the 'new_code' -boolean). This could be an option in the web server for users to -select and test for any unexpected differences (of which there should -be none, naturally ;). +- Added abstractions for progress meter and info/debug statements; + Redis perc_complete is now updated through a lambda -The current version can handle missing phenotypes, but as they are -removed there is no way for GN2 to know what SNPs the P-values belong -to. A future version will pass a SNP index to allow for missing -phenotypes. +## 0.50-gn2-pre1 (release) + +- This is the first test release of multi-core pylmm into GN2. Both + kinship calculation and GWAS have been made multi-threaded by + introducing the Python multiprocessing module. Note that only + run_other has been updated to use the new routines (so human is + still handled the old way). I have taken care that we can still run + both old-style and new-style LMM (through passing the 'new_code' + boolean). This could be an option in the web server for users to + select and test for any unexpected differences (of which there + should be none, naturally ;). + +- The current version can handle missing phenotypes, but as they are + removed there is no way for GN2 to know what SNPs the P-values + belong to. A future version will pass a SNP index to allow for + missing phenotypes.
\ No newline at end of file diff --git a/wqflask/wqflask/my_pylmm/pyLMM/__init__.py b/wqflask/wqflask/my_pylmm/pyLMM/__init__.py index c40c3221..6ab60d02 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/__init__.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/__init__.py @@ -1 +1 @@ -PYLMM_VERSION="0.50-gn2-pre1" +PYLMM_VERSION="0.50-gn2-pre2" |