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| author | zsloan | 2022-08-12 14:44:05 +0000 |
|---|---|---|
| committer | zsloan | 2022-12-21 13:04:07 -0600 |
| commit | 881376674aadd8c68f9c5ca519ce28feb84f89e8 (patch) | |
| tree | 094e6fc4dab9431d4d1273248f470301e09a5510 | |
| parent | fe74f5a07bd99cc8f5f80d45075a24d9475c1ef8 (diff) | |
| download | genenetwork2-881376674aadd8c68f9c5ca519ce28feb84f89e8.tar.gz | |
Fix homology source file path
Fix syntax error in multiline if statement
| -rw-r--r-- | wqflask/wqflask/interval_analyst/GeneUtil.py | 6 |
1 files changed, 4 insertions, 2 deletions
diff --git a/wqflask/wqflask/interval_analyst/GeneUtil.py b/wqflask/wqflask/interval_analyst/GeneUtil.py index a3fe1269..cb97489c 100644 --- a/wqflask/wqflask/interval_analyst/GeneUtil.py +++ b/wqflask/wqflask/interval_analyst/GeneUtil.py @@ -2,9 +2,11 @@ import string from wqflask.database import database_connection +from utility.tools import flat_files + def load_homology(chr_name, start_mb, end_mb, source_file): homology_list = [] - with open(source_file) as h_file: + with open(flat_files("homology/") + source_file) as h_file: current_chr = 0 for line in h_file: line_items = line.split() @@ -19,7 +21,7 @@ def load_homology(chr_name, start_mb, end_mb, source_file): "query_end": float(line_items[11])/1000000 } - if str(this_dict["ref_chr"]) == str(chr_name) and + if str(this_dict["ref_chr"]) == str(chr_name) and \ ((this_dict["ref_start"]>= start_mb and this_dict["ref_end"] <= end_mb) or (this_dict["ref_start"] < start_mb and this_dict["ref_end"] <= end_mb) or (this_dict["ref_start"] >= start_mb and this_dict["ref_end"] > end_mb) or |