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authorAlexander_Kabui2023-01-24 09:19:57 +0300
committerAlexander_Kabui2023-01-24 09:19:57 +0300
commit7012b68b1ee054004a6de8252e752f3d67612346 (patch)
treec166c208891702c7a1809d221ce2c88edd2221a2
parentcf9871f97e065c210b72251458c9649c10a778ce (diff)
downloadgenenetwork2-7012b68b1ee054004a6de8252e752f3d67612346.tar.gz
init read and write lmdb file
-rw-r--r--wqflask/wqflask/correlation/correlation_file_generator.py33
1 files changed, 29 insertions, 4 deletions
diff --git a/wqflask/wqflask/correlation/correlation_file_generator.py b/wqflask/wqflask/correlation/correlation_file_generator.py
index ccc06f3c..3b6a0984 100644
--- a/wqflask/wqflask/correlation/correlation_file_generator.py
+++ b/wqflask/wqflask/correlation/correlation_file_generator.py
@@ -146,9 +146,6 @@ def generate_csv_file(conn,db_name,txt_dir,file_name):
raise e
-def lmdb_file_generator():
- pass
-
def array_to_bytes(x:np.ndarray) -> bytes:
@@ -162,4 +159,32 @@ def array_to_bytes(x:np.ndarray) -> bytes:
def bytes_to_array(b: bytes) -> np.ndarray:
np_bytes = BytesIO(b)
- return np.load(np_bytes, allow_pickle=True) \ No newline at end of file
+ return np.load(np_bytes, allow_pickle=True)
+
+
+def lmdb_file_generator(file_name,data:np.ndarray):
+
+ #create unique filename
+
+ # pass
+
+
+def create_dataset(file_name, db_name, dataset: np.ndarray):
+
+ # map size int(ie12)
+ with lmdb.open(file_name, map_size=(dataset.nbytes*10)) as env:
+ with env.begin(write=True) as txn:
+ txn.put(db_name.encode(), array_to_bytes(dataset))
+
+ return (file_name, db_name)
+
+
+def read_dataset(file_name, db_name):
+ with lmdb.open(file_name, readonly=True, create=False) as env:
+ with env.begin() as txn:
+ ndaray_bytes = txn.get(db_name.encode())
+ # error handling
+ return bytes_to_array(ndaray_bytes)
+
+
+#simple lmdb file \ No newline at end of file