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authorAlexanderKabui2022-11-09 02:14:27 +0300
committerAlexanderKabui2022-11-09 02:14:27 +0300
commit48fa131aee8163755e45711e090229efd5ff26eb (patch)
tree3da36b85845238d8195bb78a86937fb3771f21e1
parente41eec3edf37ca2ac7859b29f22c52579df94a7d (diff)
downloadgenenetwork2-48fa131aee8163755e45711e090229efd5ff26eb.tar.gz
refactor:apply use filters
-rw-r--r--wqflask/wqflask/correlation/show_corr_results.py46
1 files changed, 44 insertions, 2 deletions
diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py
index ab8781cb..bc3b4fd7 100644
--- a/wqflask/wqflask/correlation/show_corr_results.py
+++ b/wqflask/wqflask/correlation/show_corr_results.py
@@ -73,6 +73,49 @@ def set_template_vars(start_vars, correlation_data):
return correlation_data
+ min_expr = get_float(start_vars, 'min_expr')
+ p_range_lower = get_float(start_vars, 'p_range_lower', -1.0)
+ p_range_upper = get_float(start_vars, 'p_range_upper', 1.0)
+
+ if ('loc_chr' in start_vars and
+ 'min_loc_mb' in start_vars and
+ 'max_loc_mb' in start_vars):
+
+ location_chr = get_string(start_vars, 'loc_chr')
+ min_location_mb = get_int(start_vars, 'min_loc_mb')
+ max_location_mb = get_int(start_vars, 'max_loc_mb')
+ else:
+ location_chr = min_location_mb = max_location_mb = None
+
+
+def get_user_filters(start_vars):
+ """ a user can filter the results based on different criterias"""
+ (min_expr, p_min, p_max) = (
+ get_float(start_vars, 'min_expr'),
+ get_float(start_vars, 'p_range_lower', -1.0),
+ get_float(start_vars, 'p_range_upper', 1.0)
+ )
+
+ if ["loc_chr", "min_loc_mb", "max_location_mb"] in start_vars:
+
+ location_chr = get_string(start_vars, "loc_chr")
+ min_location_mb = get_int(start_vars, "min_loc_mb")
+ max_location_mb = get_int(start_vars, "max_loc_mb")
+
+ else:
+ location_chr = min_location_mb = max_location_mb = None
+
+ return {
+
+ "min_expr": min_expr,
+ "p_range_lower": p_min,
+ "p_range_upper": p_max,
+ "location_chr": location_chr,
+ "min_location_mb": min_location_mb,
+ "max_location_mb": max_location_mb
+
+ }
+
def generate_table_metadata(all_traits, dataset_metadata, dataset_obj):
@@ -87,7 +130,7 @@ def generate_table_metadata(all_traits, dataset_metadata, dataset_obj):
return (dataset_metadata | ({trait["name"]: trait for trait in metadata}))
-def populate_table(dataset_metadata,target_dataset,corr_results):
+def populate_table(dataset_metadata, target_dataset, corr_results):
def __populate_trait__(idx, target_trait, target_dataset):
results_dict = {}
results_dict['index'] = idx + 1 #
@@ -228,7 +271,6 @@ def correlation_json_for_table(start_vars, correlation_data, this_trait, this_da
else:
continue
-
results_dict = {}
results_dict['index'] = i + 1
results_dict['trait_id'] = target_trait['name']