diff options
| author | root | 2014-02-20 13:59:41 -0600 |
|---|---|---|
| committer | root | 2014-02-20 13:59:41 -0600 |
| commit | 19e66ab781c7b0725b8739ecb1b5dc77d2537ec0 (patch) | |
| tree | 89cb40715c4a4447a1e9d186bd23024b4b1ba131 | |
| parent | afbe7528993bd6fdca47dfbd045e7bd75a5b6609 (diff) | |
| download | genenetwork2-19e66ab781c7b0725b8739ecb1b5dc77d2537ec0.tar.gz | |
Committer: root <root@alexandria.uthsc.edu>
On branch master
| -rw-r--r-- | wqflask/maintenance/dataset/datastructure.py | 15 |
1 files changed, 10 insertions, 5 deletions
diff --git a/wqflask/maintenance/dataset/datastructure.py b/wqflask/maintenance/dataset/datastructure.py index 97d8f91f..ce588c78 100644 --- a/wqflask/maintenance/dataset/datastructure.py +++ b/wqflask/maintenance/dataset/datastructure.py @@ -58,8 +58,9 @@ def get_nextdataid_phenotype(): dataid = re[0] dataid += 1 return dataid - + def insert_strain(speciesid, strainname): + cursor = utilities.get_cursor() sql = """ INSERT INTO Strain SET @@ -70,15 +71,16 @@ def insert_strain(speciesid, strainname): cursor.execute(sql, (strainname, strainname, speciesid)) def get_strain(speciesid, strainname): + cursor = utilities.get_cursor() sql = """ SELECT Strain.`Id`, Strain.`Name` FROM Strain WHERE Strain.`SpeciesId`=%s AND Strain.`Name` LIKE %s """ - cursor.execute(sql1, (speciesid, strainname)) + cursor.execute(sql, (speciesid, strainname)) return cursor.fetchone() - + def get_strain_sure(speciesid, strainname): strain = get_strain(speciesid, strainname) if not strain: @@ -86,5 +88,8 @@ def get_strain_sure(speciesid, strainname): strain = get_strain(speciesid, strainname) return strain -def get_strains_bynames(strainnames) - \ No newline at end of file +def get_strains_bynames(speciesid, strainnames): + strains = [] + for strainname in strainnames: + strains.append(get_strain_sure(speciesid, strainname)) + return strains |