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| author | BonfaceKilz | 2022-01-26 11:13:43 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2022-01-26 11:34:07 +0300 |
| commit | ea146928a397d8a813ccd169e1e532fd623f8998 (patch) | |
| tree | 7b5e5888b89905634af2a19f16236ad188a74bf9 | |
| parent | b8a3ac8a4d60e74f893a6714b8440ad6758a7fbd (diff) | |
| download | genenetwork2-ea146928a397d8a813ccd169e1e532fd623f8998.tar.gz | |
wqflask: Ignore diffs with |ε| < 0.001
* wqflask/wqflask/metadata_edits.py (update_phenotype): Filter out
values with |ε| < 0.001 when generating the diff file.
| -rw-r--r-- | wqflask/wqflask/metadata_edits.py | 24 |
1 files changed, 22 insertions, 2 deletions
diff --git a/wqflask/wqflask/metadata_edits.py b/wqflask/wqflask/metadata_edits.py index dc738f88..c1121774 100644 --- a/wqflask/wqflask/metadata_edits.py +++ b/wqflask/wqflask/metadata_edits.py @@ -257,9 +257,29 @@ def update_phenotype(dataset_id: str, name: str): r = run_cmd(cmd=("csvdiff " f"'{uploaded_file_name}' '{new_file_name}' " "--format json")) + json_data = json.loads(r.get("output")) + + # Only consider values where |ε| < 0.001; otherwise, use the + # old value in "Original". + _modifications = [] + for m in json_data.get("Modifications"): + _original = m.get("Original").split(",") + _current = m.get("Current").split(",") + for i, (x, y) in enumerate(zip(_original, _current)): + if (x.replace('.', '').isdigit() + and y.replace('.', '').isdigit() + and abs(float(x) - float(y)) < 0.001): + _current[i] = x + if not (__o:=",".join(_original)) == (__c:=",".join(_current)): + _modifications.append( + { + "Original": __o, + "Current": __c, + }) + json_data['Modifications'] = _modifications # Edge case where the csv file has not been edited! - if not any(json.loads(r.get("output")).values()): + if not any(json_data.values()): flash(f"You have not modified the csv file you downloaded!", "warning") return redirect(f"/datasets/{dataset_id}/traits/{name}" @@ -267,7 +287,7 @@ def update_phenotype(dataset_id: str, name: str): diff_output = (f"{TMPDIR}/sample-data/diffs/" f"{_file_name}.json") with open(diff_output, "w") as f: - dict_ = json.loads(r.get("output")) + dict_ = json_data dict_.update({ "trait_name": str(name), "phenotype_id": str(phenotype_id), |