Adding a todo list to the code, for issue: genenetwork/genenetwork2#119

1 files changed, 6 insertions, 0 deletions

diff --git a/wqflask/wqflask/wgcna/wgcna_analysis.py b/wqflask/wqflask/wgcna/wgcna_analysis.py
index 37a37313..84cdc241 100644
--- a/wqflask/wqflask/wgcna/wgcna_analysis.py
+++ b/wqflask/wqflask/wgcna/wgcna_analysis.py
@@ -54,6 +54,12 @@ class WGCNA(object):
             self.results[t]  = strains
 
         print("Retrieved phenotype data from database")
+        # TODO:
+        # Load data into R
+        # Calculate a good soft threshold
+        # Create block wise modules using WGCNA
+        # How many modules and how many gene per module ?
+        # Show the iconic WCGNA plot of the modules in the hanging tree
 
     def process_results(self, results):
         print("Processing WGCNA output")