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| author | zsloan | 2019-09-24 12:17:08 -0500 |
|---|---|---|
| committer | zsloan | 2019-09-24 12:17:08 -0500 |
| commit | 233ed8a88c3f5681ed984a965080be2388e4ebbf (patch) | |
| tree | 2e29fa850eab94a1f63a97a84dc81ea69bf6f3b8 | |
| parent | ed2ec7bb4cc9bd160bc19118354a575ec9351329 (diff) | |
| download | genenetwork2-233ed8a88c3f5681ed984a965080be2388e4ebbf.tar.gz | |
Fixed issue that caused GEMMA to not work with genotype files without cM, though this issue still needs to be dealt with to get the new qtlreaper working
| -rw-r--r-- | wqflask/utility/gen_geno_ob.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/wqflask/utility/gen_geno_ob.py b/wqflask/utility/gen_geno_ob.py index 5172369f..e8780879 100644 --- a/wqflask/utility/gen_geno_ob.py +++ b/wqflask/utility/gen_geno_ob.py @@ -115,7 +115,10 @@ class Locus(object): def __init__(self, marker_row, geno_ob): self.chr = marker_row[0] self.name = marker_row[1] - self.cM = float(marker_row[geno_ob.cm_column]) + try: + self.cM = float(marker_row[geno_ob.cm_column]) + except: + self.cM = float(marker_row[geno_ob.mb_column]) if geno_ob.mb_exists else 0 self.Mb = float(marker_row[geno_ob.mb_column]) if geno_ob.mb_exists else None geno_table = { |