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| author | Pjotr Prins | 2020-04-27 16:57:43 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2020-04-28 07:48:32 -0500 |
| commit | 1b83ff353bf86709643c671ff78a69fd9ede72a8 (patch) | |
| tree | 85bdfc7d6bc9d7d412ce993296331e7a206cd96b | |
| parent | 2fbd5b1283cbbba19edf27ec0109e64ef8bc4723 (diff) | |
| download | genenetwork2-1b83ff353bf86709643c671ff78a69fd9ede72a8.tar.gz | |
Added a script for a default runner
| -rw-r--r-- | etc/default_settings.py | 2 | ||||
| -rwxr-xr-x | scripts/run_debug.sh | 20 |
2 files changed, 22 insertions, 0 deletions
diff --git a/etc/default_settings.py b/etc/default_settings.py index 75f84dc4..053b906d 100644 --- a/etc/default_settings.py +++ b/etc/default_settings.py @@ -28,6 +28,8 @@ GN_VERSION = open("../etc/VERSION","r").read() SQL_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s" SQL_ALCHEMY_POOL_RECYCLE = 3600 GN_SERVER_URL = "http://localhost:8880/" # REST API server +GN2_BASE_URL = "http://genenetwork.org/" # to pick up REST API +GN2_BRANCH_URL = GN2_BASE_URL # ---- Flask configuration (see website) TRAP_BAD_REQUEST_ERRORS = True diff --git a/scripts/run_debug.sh b/scripts/run_debug.sh new file mode 100755 index 00000000..be7ecdb8 --- /dev/null +++ b/scripts/run_debug.sh @@ -0,0 +1,20 @@ +#! /bin/bash +# +# PLEASE DO NOT CHANGE THIS FILE - copy it elsewhere to run +# +# Run with GN2_PROFILE and SERVER_PORT overrides, e.g. +# +# env GN2_PROFILE=/usr/local/guix-profiles/gn-latest SERVER_PORT=5010 scripts/run_debug.sh + +[ -z $GN2_PROFILE ] && export GN2_PROFILE=/usr/local/guix-profiles/gn-latest +[ -z $SERVER_PORT ] && export SERVER_PORT=5010 + +echo Running on port $SERVER_PORT from $GN2_PROFILE + +cwd=`pwd` +echo Running source from $cwd + +mkdir -p ~/tmp + +env TMPDIR=~/tmp WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG GENENETWORK_FILES=/export/data/genenetwork/genotype_files/ SQL_URI=mysql://webqtlout:webqtlout@localhost/db_webqtl ./bin/genenetwork2 etc/default_settings.py -gunicorn-dev + |