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authorMunyoki Kilyungi2023-05-31 19:53:41 +0300
committerBonfaceKilz2023-06-02 21:45:06 +0300
commit1161cec692aa0e115435e9bd7b6b5fd03fb0efc3 (patch)
tree709ba2f2816b8295ed754a193789b1bd1327c1d0
parent1a6ed93a8f1def9c9f22df2aa99ea9dbffa2a9ff (diff)
downloadgenenetwork2-1161cec692aa0e115435e9bd7b6b5fd03fb0efc3.tar.gz
Delete trait metadata from the show_traits page
* wqflask/wqflask/templates/show_metadata_details.html: Delete. * wqflask/wqflask/templates/show_trait.html: Delete if block that checks includes trait metadata. * wqflask/wqflask/views.py: Remove "metadata". Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
-rw-r--r--wqflask/wqflask/templates/show_metadata_details.html186
-rw-r--r--wqflask/wqflask/templates/show_trait.html12
-rw-r--r--wqflask/wqflask/views.py12
3 files changed, 0 insertions, 210 deletions
diff --git a/wqflask/wqflask/templates/show_metadata_details.html b/wqflask/wqflask/templates/show_metadata_details.html
deleted file mode 100644
index ffb197e2..00000000
--- a/wqflask/wqflask/templates/show_metadata_details.html
+++ /dev/null
@@ -1,186 +0,0 @@
-<table class="table metadata">
- {% if metadata.accession_id %}
- <tr>
- <td><b>Title:</b></td>
- <td><div>{{ metadata.accession_id }} {% if metadata.title %}: {{ metadata.title }} {% endif %}</div></td>
- </tr>
- {% endif %}
-
- {% if metadata.geo_series %}
- <tr>
- <td><b>Geo Series:</b></td>
- <td><div>{{ metadata.geo_series|safe }}</div></td>
- </tr>
- {% endif %}
-
- {% if metadata.dataset_group %}
- <tr>
- <td><b>Dataset Group:</b></td>
- <td><div>{{ metadata.dataset_group }}</div></td>
- </tr>
- {% endif %}
-
- {% if metadata.species_name %}
- <tr>
- <td><b>Species:</b></td>
- <td><div>{{ metadata.species_name }}</div></td>
- </tr>
- {% endif %}
-
- {% if metadata.inbred_set_name %}
- <tr>
- <td><b>Group:</b></td>
- <td><div>{{ metadata.inbred_set_name }}</div></td>
- </tr>
- {% endif %}
-
- {% if metadata.investigators %}
- <tr>
- <td><b>Investigator(s):</b></td>
- <td><div>{{ metadata.investigators.name }}, {{ metadata.investigators.city }}, {{ metadata.investigators.country }} </div></td>
- </tr>
- {% endif %}
-
- {% if metadata.tissue_name %}
- <tr>
- <td><b>Tissue:</b></td>
- <td>
- {% if metadata.about_tissue %}
- <div></div>
- <details>
- <summary><b title="Click to view tissue information">{{ metadata.tissue_name }}</b></summary>
- <b>About the tissue used to generate this set of data:</b>
- <div>{{ metadata.about_tissue|safe }}</div>
- </details>
- {% else %}
- {{ metadata.tissue_name }}
- {% endif %}
- </td>
- </tr>
- {% endif %}
-
- {% if metadata.platform_name %}
- <tr>
- <td><b>Platforms:</b></td>
- <td>
- {% if metadata.about_platform %}
- <details>
- <summary><b title="Click to view platform information">{{ metadata.platform_name }}</b></summary>
- <b>About the array platform:</b>
- {{ metadata.about_platform|safe }}
- </details>
- {% else %}
- {{ metadata.platform_name }}
- {% endif %}
- </td>
- </tr>
- {% endif %}
-
- {% if metadata.normalization_name %}
- <tr>
- <td><b>Normalization:</b></td>
- <td>
- {{ metadata.normalization_name }}
- </td>
- </tr>
- {% endif %}
-
- {% if metadata.summary %}
- <tr>
- <td></td>
- <td>
- <details>
- <summary><b title="Click to view summary">Summary</b></summary>
- {{ metadata.summary|safe }}
- </details>
- </td>
- </tr>
- {% endif %}
-
-
- {% if metadata.about_cases %}
- <tr>
- <td></td>
- <td>
- <details>
- <summary><b title="Click to view case information">About the cases used to generate this set of data</b></summary>
- {{ metadata.about_cases|safe }}
- </details>
- </td>
- </tr>
- {% endif %}
-
- {% if metadata.about_data_processing %}
- <tr>
- <td></td>
- <td>
- <details>
- <summary><b title="Click to view data values and processing">About Data Values and Data Processing</b></summary>
- {{ metadata.about_data_processing|safe }}
- </details>
- </td>
- </tr>
- {% endif %}
-
- {% if metadata.notes %}
- <tr>
- <td></td>
- <td>
- <details>
- <summary><b>Notes</b></summary>
- {{ metadata.notes|safe }}
- </details>
- </td>
- </tr>
- {% endif %}
-
- {% if metadata.experiment_design %}
- <tr>
- <td></td>
- <td>
- <details>
- <summary><b>Experiment Type</b></summary>
- {{ metadata.experiment_design|safe }}
- </details>
- </td>
- </tr>
- {% endif %}
-
- {% if metadata.contributors %}
- <tr>
- <td></td>
- <td>
- <details>
- <summary><b>Contributor(s)</b></summary>
- {{ metadata.contributors|safe }}
- </details>
- </td>
- </tr>
- {% endif %}
-
- {% if metadata.citation %}
- <tr>
- <td>
- <td>
- <details>
- <summary><b>Citation</b></summary>
- {{ metadata.citation|safe }}
- </details>
- </td>
- </tr>
- {% endif %}
-
- {% if metadata.acknowledgment %}
- <tr>
- <td></td>
- <td>
- <details>
- <summary><b>Data source acknowledgment</b></summary>
- {{ metadata.acknowledgment|safe }}
- </details>
- </td>
- </tr>
- {% endif %}
-
-
-</table>
diff --git a/wqflask/wqflask/templates/show_trait.html b/wqflask/wqflask/templates/show_trait.html
index c394af30..97b613e3 100644
--- a/wqflask/wqflask/templates/show_trait.html
+++ b/wqflask/wqflask/templates/show_trait.html
@@ -57,18 +57,6 @@
{% include 'show_trait_details.html' %}
</div>
</div>
- {% if metadata %}
- <div class="panel-heading" data-toggle="collapse" data-parent="#accordion" data-target="#collapseMeta">
- <h3 class="panel-title">
- <span class="glyphicon glyphicon-chevron-down"></span> Data Set Group: {{ dataset.fullname }}
- </h3>
- </div>
- <div id="collapseMeta" class="panel-collapse collapse in">
- <div class="panel-body">
- {% include 'show_metadata_details.html' %}
- </div>
- </div>
- {% endif %}
</div>
<div class="panel panel-default">
<div class="panel-heading stats_panel" data-toggle="collapse" data-parent="#accordion" data-target="#collapseTwo">
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index 188dc27b..243c79b2 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -509,20 +509,8 @@ def show_trait_page():
template_vars.js_data = json.dumps(template_vars.js_data,
default=json_default_handler,
indent=" ")
- # Should there be any mis-configurations, things will still
- # work.
- metadata = {}
- try:
- metadata = requests.get(
- urljoin(
- GN3_LOCAL_URL,
- f"/api/metadata/dataset/{request.args.get('dataset')}")
- ).json()
- except:
- metadata = {}
return render_template(
"show_trait.html",
- metadata=metadata,
**{
**template_vars.__dict__,
"user": privileges_data["user"],