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| author | Alexanderlacuna | 2020-11-11 23:05:17 +0300 |
|---|---|---|
| committer | Alexanderlacuna | 2020-11-11 23:05:17 +0300 |
| commit | 424f44c0656da8f99dce0fa0a00bd5e6ba9bace3 (patch) | |
| tree | 05472080464eccb3fc26cdea5da1c67fab7ed9bc | |
| parent | 96dd0a10f0bfe66afab9701dd028f169d63cdae5 (diff) | |
| download | genenetwork2-424f44c0656da8f99dce0fa0a00bd5e6ba9bace3.tar.gz | |
add tests for marker_regression/gemma_mapping.py
| -rw-r--r-- | wqflask/tests/wqflask/marker_regression/test_gemma_mapping.py | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/wqflask/tests/wqflask/marker_regression/test_gemma_mapping.py b/wqflask/tests/wqflask/marker_regression/test_gemma_mapping.py index 06ce55d8..ed72cb33 100644 --- a/wqflask/tests/wqflask/marker_regression/test_gemma_mapping.py +++ b/wqflask/tests/wqflask/marker_regression/test_gemma_mapping.py @@ -151,18 +151,21 @@ X\tgn7\t2324424\tQ\tE\tA\tP\tMMB\tCDE\t0.4 mock_open.assert_called_once_with( "/home/user/img/gema_file_output.assoc.txt") self.assertEqual(results, expected) + @mock.patch("wqflask.marker_regression.gemma_mapping.webqtlConfig.GENERATED_IMAGE_DIR", "/home/user/img") def test_parse_gemma_output_empty_return(self): output_file_results = """chr\t today""" with mock.patch("builtins.open", mock.mock_open(read_data=output_file_results)) as mock_open: results = parse_gemma_output(genofile_name="gema_file") self.assertEqual(results, []) + @mock.patch("wqflask.marker_regression.gemma_mapping.TEMPDIR", "/home/tmp") @mock.patch("wqflask.marker_regression.gemma_mapping.os") def test_parse_loco_output_file_found(self, mock_os): mock_os.path.isfile.return_value = True file_to_write = """{"files":["file_1","file_2"]}""" pass + @mock.patch("wqflask.marker_regression.gemma_mapping.TEMPDIR", "/home/tmp") @mock.patch("wqflask.marker_regression.gemma_mapping.os") def test_parse_loco_output_file_not_found(self, mock_os): |