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| author | Pjotr Prins | 2015-04-13 10:15:59 +0200 |
|---|---|---|
| committer | Pjotr Prins | 2015-04-13 10:15:59 +0200 |
| commit | 6cef9c3b27d92383f89a432f6fa0e9fd16107f66 (patch) | |
| tree | bdad992faa88f7473eb2227aa90f5a659aafd03b | |
| parent | 1823434ff8b54df0bd8ce1d7d19a37d74e850dd5 (diff) | |
| download | genenetwork2-6cef9c3b27d92383f89a432f6fa0e9fd16107f66.tar.gz | |
Added examples for convertlmm.py
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py | 10 |
1 files changed, 8 insertions, 2 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py index 3b6b5d70..4312fed0 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py @@ -1,5 +1,5 @@ -# This is a converter for common LMM formats, so as to keep complexity -# outside the main routines. +# This is a converter for common LMM formats, so as to keep file +# reader complexity outside the main routines. # Copyright (C) 2015 Pjotr Prins (pjotr.prins@thebird.nl) # @@ -31,6 +31,12 @@ python convertlmm.py [--plink] [--prefix out_basename] [--kinship kfile] [--phen Convert files for runlmm.py processing. Writes to stdout by default. try --help for more information + +Examples: + + python ./my_pylmm/pyLMM/convertlmm.py --plink --pheno data/test_snps.132k.clean.noX.fake.phenos > test.pheno + + python ./my_pylmm/pyLMM/convertlmm.py --plink --pheno data/test_snps.132k.clean.noX.fake.phenos --geno data/test_snps.132k.clean.noX > test.geno """ # if len(args) == 0: |