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| author | Frederick Muriuki Muriithi | 2022-09-09 06:08:53 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-09-09 06:08:53 +0300 |
| commit | 1055679028cdd24f845aac80dd4cde22a17a1e25 (patch) | |
| tree | 754683f5be9b50995ff078d5c75c5eefef9ebebb | |
| parent | 209a41444682def27bcdb626e77c27262539b5f0 (diff) | |
| download | genenetwork2-1055679028cdd24f845aac80dd4cde22a17a1e25.tar.gz | |
Replace `g.db.execute` with `cursor.execute`
| -rw-r--r-- | wqflask/base/data_set.py | 46 |
1 files changed, 24 insertions, 22 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index cd626526..4d708e59 100644 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -479,28 +479,30 @@ class DatasetGroup: def datasets(group_name, this_group=None): key = "group_dataset_menu:v2:" + group_name dataset_menu = [] - the_results = g.db.execute(''' - (SELECT '#PublishFreeze',PublishFreeze.FullName,PublishFreeze.Name - FROM PublishFreeze,InbredSet - WHERE PublishFreeze.InbredSetId = InbredSet.Id - and InbredSet.Name = '%s' - ORDER BY PublishFreeze.Id ASC) - UNION - (SELECT '#GenoFreeze',GenoFreeze.FullName,GenoFreeze.Name - FROM GenoFreeze, InbredSet - WHERE GenoFreeze.InbredSetId = InbredSet.Id - and InbredSet.Name = '%s') - UNION - (SELECT Tissue.Name, ProbeSetFreeze.FullName,ProbeSetFreeze.Name - FROM ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue - WHERE ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id - and ProbeFreeze.TissueId = Tissue.Id - and ProbeFreeze.InbredSetId = InbredSet.Id - and InbredSet.Name like %s - ORDER BY Tissue.Name, ProbeSetFreeze.OrderList DESC) - ''' % (group_name, - group_name, - "'" + group_name + "'")).fetchall() + with database_connection() as conn, conn.cursor() as cursor: + cursor.execute(''' + (SELECT '#PublishFreeze',PublishFreeze.FullName,PublishFreeze.Name + FROM PublishFreeze,InbredSet + WHERE PublishFreeze.InbredSetId = InbredSet.Id + and InbredSet.Name = '%s' + ORDER BY PublishFreeze.Id ASC) + UNION + (SELECT '#GenoFreeze',GenoFreeze.FullName,GenoFreeze.Name + FROM GenoFreeze, InbredSet + WHERE GenoFreeze.InbredSetId = InbredSet.Id + and InbredSet.Name = '%s') + UNION + (SELECT Tissue.Name, ProbeSetFreeze.FullName,ProbeSetFreeze.Name + FROM ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue + WHERE ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id + and ProbeFreeze.TissueId = Tissue.Id + and ProbeFreeze.InbredSetId = InbredSet.Id + and InbredSet.Name like %s + ORDER BY Tissue.Name, ProbeSetFreeze.OrderList DESC) + ''' % (group_name, + group_name, + "'" + group_name + "'")) + the_results = cursor.fetchall() sorted_results = sorted(the_results, key=lambda kv: kv[0]) |