Delete unused JavaScript files

* wqflask/wqflask/static/new/javascript/dataset_select_menu.js: Delete.
* wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js:
Ditto.

2 files changed, 0 insertions, 422 deletions

diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js
deleted file mode 100644
index 9ad38102..00000000
--- a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js
+++ /dev/null
@@ -1,169 +0,0 @@
-$(function() {
-  var gndata;  // loaded once for all to use
-  process_json = function(data) {
-      populate_species();
-      return apply_default();
-  };
-  $.getJSON(gn_server_url+"int/menu/main.json",
-  function(data) {
-    gndata = data;
-    console.log("***** GOT DATA from GN_SERVER ****");
-    console.log(gndata);
-    populate_species();
-  }).error(function() {
-    console.log("ERROR: GN_SERVER not responding");
-    alert("ERROR: GN_SERVER internal REST API is not responding");
-  });
-
-  var populate_species = function() {
-    var species_list = Object.keys(gndata.menu).map(function(species) {
-      var mitem = gndata.menu[species].menu
-      // console.log("Species menu:",species,mitem)
-      return [species,mitem];
-    });
-    redo_dropdown($('#species'), species_list);
-    return populate_group();
-  };
-  window.populate_species = populate_species;
-
-  var populate_group = function() {
-    var species = $('#species').val();
-    var groups = gndata.groups[species].map(function(item) {
-        console.log("group:",item);
-        return item.slice(1,3);
-    })
-    redo_dropdown($('#group'), groups);
-    return populate_type();
-  };
-  window.populate_group = populate_group;
-
-  var populate_type = function() {
-    var species = $('#species').val();
-    var group = $('#group').val();
-    var type_list = gndata.menu[species].types[group].map(function(item) {
-        return [item,item];
-    });
-
-    redo_dropdown($('#type'), type_list);
-    return populate_dataset();
-  };
-  window.populate_type = populate_type;
-
-  var populate_dataset = function() {
-    var species = $('#species').val();
-    var group = $('#group').val();
-    var type = $('#type').val();
-    var dataset_list = gndata.datasets[species][group][type].map(function(item) {
-        return item.slice(1,3);
-    })
-
-    return redo_dropdown($('#dataset'), dataset_list);
-  };
-  window.populate_dataset = populate_dataset;
-
-  var redo_dropdown = function(dropdown, items) {
-    var item, _i, _len, _results;
-    console.log("in redo:", dropdown, items);
-    dropdown.empty();
-    _results = [];
-    for (_i = 0, _len = items.length; _i < _len; _i++) {
-      item = items[_i];
-      if (item.length > 2){
-        _results.push(dropdown.append($("<option data-id=\""+item[0]+"\" />").val(item[1]).text(item[2])));
-      } else {
-        _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
-      }
-    }
-    return _results;
-  };
-  $('#species').change((function(_this) {
-    return function() {
-      return populate_group();
-    };
-  })(this));
-  $('#group').change((function(_this) {
-    return function() {
-      return populate_type();
-    };
-  })(this));
-  $('#type').change((function(_this) {
-    return function() {
-      return populate_dataset();
-    };
-  })(this));
-  open_window = function(url, name) {
-    var options;
-    options = "menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=1,directories=1,width=900";
-    return open(url, name, options).focus();
-  };
-  var group_info = function() {
-    var group, species, url;
-    species = $('#species').val();
-    group = $('#group').val();
-    url = "/" + species + "Cross.html#" + group;
-    return open_window(url, "Group Info");
-  };
-  $('#group_info').click(group_info);
-  var dataset_info = function() {
-    var dataset, url;
-    accession_id = $('#dataset option:selected').data("id");
-    url = "http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=" + accession_id;
-    return open_window(url, "Dataset Info");
-  };
-  $('#dataset_info').click(dataset_info);
-  var make_default = function() {
-    var holder, item, jholder, _i, _len, _ref;
-    alert("The current settings are now your default.")
-    holder = {};
-    _ref = ['species', 'group', 'type', 'dataset'];
-    for (_i = 0, _len = _ref.length; _i < _len; _i++) {
-      item = _ref[_i];
-      holder[item] = $("#" + item).val();
-    }
-    jholder = JSON.stringify(holder);
-    return $.cookie('search_defaults', jholder, {
-      expires: 365
-    });
-  };
-  var apply_default = function() {
-    var defaults, item, populate_function, _i, _len, _ref, _results;
-    defaults = $.cookie('search_defaults');
-    if (defaults) {
-      defaults = $.parseJSON(defaults);
-    } else {
-      defaults = {
-        species: "mouse",
-        group: "BXD",
-        type: "Hippocampus mRNA",
-        dataset: "HC_M2_0606_P"
-      };
-    }
-    _ref = [['species', 'group'], ['group', 'type'], ['type', 'dataset'], ['dataset', null]];
-    _results = [];
-    for (_i = 0, _len = _ref.length; _i < _len; _i++) {
-      item = _ref[_i];
-      $("#" + item[0]).val(defaults[item[0]]);
-      if (item[1]) {
-        populate_function = "populate_" + item[1];
-        console.log("Calling:", populate_function);
-        _results.push(window[populate_function]());
-      } else {
-        _results.push(void 0);
-      }
-    }
-    return _results;
-  };
-  var check_search_term = function() {
-    var or_search_term, and_search_term;
-    or_search_term = $('#or_search').val();
-    and_search_term = $('#and_search').val();
-    console.log("or_search_term:", or_search_term);
-    console.log("and_search_term:", and_search_term);
-    if (or_search_term === "" && and_search_term === "") {
-      alert("Please enter one or more search terms or search equations.");
-      return false;
-    }
-  };
-  $("#make_default").click(make_default);
-  return $("#btsearch").click(check_search_term);
-});
diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js
deleted file mode 100644
index 1d4a94d9..00000000
--- a/wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js
+++ /dev/null
@@ -1,253 +0,0 @@
-var apply_default, check_search_term, dataset_info, group_info, make_default, open_window, populate_dataset, populate_group, populate_species, populate_type, process_json, redo_dropdown;
-process_json = function(data) {
-  window.jdata = data;
-  populate_species();
-  if ($('#type').length > 0) { //This is to determine if it's the index page or the submit_trait page (which only has species and group selection and no make default option)
-    return apply_default();
-  }
-};
-
-$.ajax('/api/v_pre1/gen_dropdown', {
-  dataType: 'json',
-  success: process_json
-});
-
-populate_species = function() {
-  var species_list;
-  species_list = this.jdata.species;
-  redo_dropdown($('#species'), species_list);
-  return populate_group();
-};
-window.populate_species = populate_species;
-populate_group = function() {
-  var group_list, species;
-  console.log("in populate group");
-  species = $('#species').val();
-  group_list = this.jdata.groups[species];
-  for (_i = 0, _len = group_list.length; _i < (_len - 1); _i++) {
-     if (group_list[_i][0] == "BXD300"){
-         group_list.splice(_i, 1)
-     }
-  }
-  redo_dropdown($('#group'), group_list);
-  if ($('#type').length > 0) { //This is to determine if it's the index page or the submit_trait page (which only has species and group selection and no make default option)
-    return populate_type();
-  }
-};
-window.populate_group = populate_group;
-populate_type = function() {
-  var group, species, type_list;
-  console.log("in populate type");
-  species = $('#species').val();
-  group = $('#group').val();
-  type_list = this.jdata.types[species][group];
-  redo_dropdown($('#type'), type_list);
-  return populate_dataset();
-};
-window.populate_type = populate_type;
-populate_dataset = function() {
-  var dataset_list, group, species, type;
-  console.log("in populate dataset");
-  species = $('#species').val();
-  group = $('#group').val();
-  type = $('#type').val();
-  console.log("sgt:", species, group, type);
-  dataset_list = this.jdata.datasets[species][group][type];
-  console.log("pop_dataset:", dataset_list);
-  return redo_dropdown($('#dataset'), dataset_list);
-};
-window.populate_dataset = populate_dataset;
-redo_dropdown = function(dropdown, items) {
-  var item, _i, _len, _results;
-  console.log("in redo:", dropdown, items);
-  dropdown.empty();
-  _results = [];
-
-  if (dropdown.attr('id') == "group"){
-    group_family_list = [];
-    for (_i = 0, _len = items.length; _i < _len; _i++) {
-      item = items[_i];
-      group_family = item[2].toString().split(":")[1]
-      group_family_list.push([item[0], item[1], group_family])
-    }
-
-    current_family = ""
-    this_opt_group = null
-    for (_i = 0, _len = group_family_list.length; _i < _len; _i++) {
-      item = group_family_list[_i];
-      if (item[2] != "None" && current_family == ""){
-        current_family = item[2]
-        this_opt_group = $("<optgroup label=\"" + item[2] + "\">")
-        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
-      } else if (current_family != "" && item[2] == current_family){
-        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
-        if (_i == group_family_list.length - 1){
-          _results.push(dropdown.append(this_opt_group))
-        }
-      } else if (current_family != "" && item[2] != current_family && item[2] != "None"){
-        current_family = item[2]
-        _results.push(dropdown.append(this_opt_group))
-        this_opt_group = $("<optgroup label=\"" + current_family + "\">")
-        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
-        if (_i == group_family_list.length - 1){
-          _results.push(dropdown.append(this_opt_group))
-        }
-      } else if (current_family != "" && this_opt_group != null && item[2] == "None"){
-        _results.push(dropdown.append(this_opt_group))
-        current_family = ""
-        _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
-      } else {
-        _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
-      }
-    }
-  } else if (dropdown.attr('id') == "type"){
-    type_family_list = [];
-    for (_i = 0, _len = items.length; _i < _len; _i++) {
-      item = items[_i];
-      type_family_list.push([item[0], item[1], item[2]])
-    }
-
-    current_family = ""
-    this_opt_group = null
-    for (_i = 0, _len = type_family_list.length; _i < _len; _i++) {
-      item = type_family_list[_i];
-      if (item[2] != "None" && current_family == ""){
-        current_family = item[2]
-        this_opt_group = $("<optgroup label=\"" + item[2] + "\">")
-        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
-        if (_i == type_family_list.length - 1){
-          _results.push(dropdown.append(this_opt_group))
-        }
-      } else if (current_family != "" && item[2] == current_family){
-        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
-        if (_i == type_family_list.length - 1){
-          _results.push(dropdown.append(this_opt_group))
-        }
-      } else if (current_family != "" && item[2] != current_family && item[2] != "None"){
-        current_family = item[2]
-        _results.push(dropdown.append(this_opt_group))
-        this_opt_group = $("<optgroup label=\"" + current_family + "\">")
-        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
-        if (_i == type_family_list.length - 1){
-          _results.push(dropdown.append(this_opt_group))
-        }
-      } else {
-        _results.push(dropdown.append(this_opt_group))
-        current_family = ""
-        _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
-      } 
-    }
-  } else {
-    for (_i = 0, _len = items.length; _i < _len; _i++) {
-      item = items[_i];
-      if (item.length > 2){
-        _results.push(dropdown.append($("<option data-id=\""+item[0]+"\" />").val(item[1]).text(item[2])));
-      } else {
-        _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
-      }
-    }
-  }
-
-  return _results;
-};
-$('#species').change((function(_this) {
-  return function() {
-    return populate_group();
-  };
-})(this));
-$('#group').change((function(_this) {
-  return function() {
-    if ($('#type').length > 0) { //This is to determine if it's the index page or the submit_trait page (which only has species and group selection and no make default option)
-      return populate_type();
-    }
-    else {
-      return false
-    }
-  };
-})(this));
-$('#type').change((function(_this) {
-  return function() {
-    return populate_dataset();
-  };
-})(this));
-open_window = function(url, name) {
-  var options;
-  options = "menubar=yes,toolbar=yes,titlebar=yes,location=yes,resizable=yes,status=yes,scrollbars=yes,directories=yes,width=900";
-  return open(url, name, options).focus();
-};
-group_info = function() {
-  var group, species, url;
-  species = $('#species').val();
-  group = $('#group').val();
-  url = "http://gn1.genenetwork.org/" + species + "Cross.html#" + group;
-  return open_window(url, "Group Info");
-};
-$('#group_info').click(group_info);
-dataset_info = function() {
-  var dataset, url;
-  accession_id = $('#dataset option:selected').data("id");
-  name = $('#dataset option:selected').val();
-  if (accession_id != "None") {
-    url = "http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=" + accession_id + "&InfoPageName=" + name;
-  } else {
-    url = "http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName=" + name;
-  }
-  return open_window(url, "Dataset Info");
-};
-$('#dataset_info').click(dataset_info);
-make_default = function() {
-  var holder, item, jholder, _i, _len, _ref;
-  alert("The current settings are now your default.")
-  holder = {};
-  _ref = ['species', 'group', 'type', 'dataset'];
-  for (_i = 0, _len = _ref.length; _i < _len; _i++) {
-    item = _ref[_i];
-    holder[item] = $("#" + item).val();
-  }
-  jholder = JSON.stringify(holder);
-  return $.cookie('search_defaults', jholder, {
-    expires: 365
-  });
-};
-apply_default = function() {
-  var defaults, item, populate_function, _i, _len, _ref, _results;
-  defaults = $.cookie('search_defaults');
-  if (defaults) {
-    defaults = $.parseJSON(defaults);
-  } else {
-    defaults = {
-      species: "mouse",
-      group: "BXD",
-      type: "Hippocampus mRNA",
-      dataset: "HC_M2_0606_P"
-    };
-  }
-
-  _ref = [['species', 'group'], ['group', 'type'], ['type', 'dataset'], ['dataset', null]];
-  _results = [];
-  for (_i = 0, _len = _ref.length; _i < _len; _i++) {
-    item = _ref[_i];
-    $("#" + item[0]).val(defaults[item[0]]);
-    if (item[1]) {
-      populate_function = "populate_" + item[1];
-      console.log("Calling:", populate_function);
-      _results.push(window[populate_function]());
-    } else {
-      _results.push(void 0);
-    }
-  }
-  return _results;
-};
-check_search_term = function() {
-  var or_search_term, and_search_term;
-  or_search_term = $('#or_search').val();
-  and_search_term = $('#and_search').val();
-  console.log("or_search_term:", or_search_term);
-  console.log("and_search_term:", and_search_term);
-  if (or_search_term === "" && and_search_term === "") {
-    alert("Please enter one or more search terms or search equations.");
-    return false;
-  }
-};
-$("#make_default").click(make_default);
-$("#btsearch").click(check_search_term);