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| author | Munyoki Kilyungi | 2022-09-01 15:55:40 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2022-09-05 12:20:19 +0300 |
| commit | e0176f3e0378c4c7dbf31f7dd209001139bc6744 (patch) | |
| tree | 98d386e1b155ab683b45689d8921ee63dae527a8 | |
| parent | 2a22204665065517ed1d14ec2fc12f25378f795b (diff) | |
| download | genenetwork2-e0176f3e0378c4c7dbf31f7dd209001139bc6744.tar.gz | |
Update values for "additive" in failing gemma test
* wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
(TestGemmaMapping.test_parse_loco_outputfile_found): Use a halved
value in expected_results["additive"].
| -rw-r--r-- | wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py index 611c0d70..53d96d7f 100644 --- a/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py +++ b/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py @@ -165,12 +165,12 @@ X\tM5\t12\tQ\tE\tMMB\tR\t21.1\tW\t0.65\t0.6""" this_dataset={}, gwa_output_filename=".xw/") expected_results = [ {'name': 'M1', 'chr': 'X/Y', 'Mb': 2.8457155e-05, 'p_value': 0.85, - 'additive': -23.3, 'lod_score': 0.07058107428570727}, + 'additive': -11.65, 'lod_score': 0.07058107428570727}, {'name': 'M2', 'chr': 4, 'Mb': 1.2e-05, 'p_value': 0.5, - 'additive': -24.0, 'lod_score': 0.3010299956639812}, + 'additive': -12.0, 'lod_score': 0.3010299956639812}, {'name': 'M4', 'chr': 'Y', 'Mb': 1.2e-05, 'p_value': 0.7, - 'additive': -11.6, 'lod_score': 0.1549019599857432}, - {'name': 'M5', 'chr': 'X', 'Mb': 1.2e-05, 'p_value': 0.6, 'additive': -21.1, 'lod_score': 0.22184874961635637}] + 'additive': -5.8, 'lod_score': 0.1549019599857432}, + {'name': 'M5', 'chr': 'X', 'Mb': 1.2e-05, 'p_value': 0.6, 'additive': -10.55, 'lod_score': 0.22184874961635637}] self.assertEqual(expected_results, results) @mock.patch("wqflask.marker_regression.gemma_mapping.TEMPDIR", "/home/tmp") |