delete class initiliazation object

1 files changed, 9 insertions, 16 deletions

diff --git a/wqflask/wqflask/ctl/gn3_ctl_analysis.py b/wqflask/wqflask/ctl/gn3_ctl_analysis.py
index 71e96fc7..113764a7 100644
--- a/wqflask/wqflask/ctl/gn3_ctl_analysis.py
+++ b/wqflask/wqflask/ctl/gn3_ctl_analysis.py
@@ -1,5 +1,4 @@
 import requests
-from dataclasses import dataclass
 
 from utility import genofile_parser
 from utility.tools import GN3_LOCAL_URL
@@ -9,15 +8,6 @@ from base.trait import create_trait
 from base.trait import retrieve_sample_data
 
 
-@dataclass
-class CtlDatabase:
-    """class for keeping track of ctl db data"""
-
-    dataset: dict
-
-    trait_db_list: list
-
-
 def parse_geno_data(dataset_group_name) ->dict:
 	"""function to parse geno file data"""
 	genofile_location = locate(dataset.group.name + ".geno", "genotype")
@@ -92,18 +82,17 @@ def run_ctl(requestform):
     """function to make an api call
     to gn3 and run ctl"""
 
-    CtlObj = CtlDatabase()
-
     ctl_api = f"{GN3_LOCAL_URL}/api/ctl/run_ctl"
 
     form_data = parse_form_data(requestform)
 
-    pheno_data = parse_geno_data(CtlObj.dataset.group.name)
+    trait_db_list = form_data["trait_db_list"]
+    dataset = data_set.create_dataset(trait_db_list[0].split(":")[1])
 
+    pheno_data = parse_geno_data(dataset.group.name)
 
-    geno_data = parse_phenotype_data(form_data["trait_db_list"])
+    geno_data = parse_phenotype_data(trait_db_list)
 
-    # refactor below
 
     pheno_data["individuals"] = geno_data["individuals"]
 
@@ -119,4 +108,8 @@ def run_ctl(requestform):
 
     # todo check for errors
 
-    return response.json()
+    response_data =  response.json()
+
+    print(">>>>>>>>>>>>>>>>>>>>>>",response_data)
+
+    return ""