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authorZachary Sloan2013-03-12 18:35:47 -0500
committerZachary Sloan2013-03-12 18:35:47 -0500
commitb316d0a842ca83049aeb8e374db70831bcb4a928 (patch)
tree0362babff95b5d9f7b1242ce22e7d5c06a614d59
parent88a0830126594b14a418555bba1dbc166a07eb1c (diff)
downloadgenenetwork2-b316d0a842ca83049aeb8e374db70831bcb4a928.tar.gz
Added the script generating probesetfreeze data matrix files
The script was created to regenerate a bad file for Evan
-rw-r--r--wqflask/base/generate_probesetfreeze_file.py31
1 files changed, 31 insertions, 0 deletions
diff --git a/wqflask/base/generate_probesetfreeze_file.py b/wqflask/base/generate_probesetfreeze_file.py
new file mode 100644
index 00000000..a0ff804b
--- /dev/null
+++ b/wqflask/base/generate_probesetfreeze_file.py
@@ -0,0 +1,31 @@
+from __future__ import absolute_import, print_function, division
+import os
+import math
+
+import json
+import itertools
+
+from flask import Flask, g
+
+from base import webqtlConfig
+from dbFunction import webqtlDatabaseFunction
+from utility import webqtlUtil
+
+from MySQLdb import escape_string as escape
+from pprint import pformat as pf
+
+
+query = """ select ProbeSet.Name
+ from ProbeSetXRef,
+ ProbeSetFreeze,
+ ProbeSet
+ where ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id and
+ ProbeSetFreeze.Name = "EPFLMouseMuscleCDRMA1211" and
+ ProbeSetXRef.ProbeSetId = ProbeSet.Id;
+ """
+
+markers = g.db.execute(query).fetchall()
+print("markers: ", pf(markers))
+
+if __name__ == '__main__':
+ main() \ No newline at end of file